Browse Element(s) Details


OsAffx.5222.1.S1_at

Description tigr:9635.m00494
TID=OsAffx.5222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0556011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05520OsAffx.5221.1.S1_at9/117+2574494..2576913hypothetical protein
LOC_Os07g05530OsAffx.16099.1.S1_at11/117+2578517..2579311hypothetical protein
LOC_Os07g05540OsAffx.5954.4.S1_x_at4/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.1.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.5.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.3.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.2.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.25503.1.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05550Os.49224.1.S1_at11/117+2594019..2597171expressed protein
LOC_Os07g05560OsAffx.5222.1.S1_at11/117+2597362..2599140pentatricopeptide, putative, expressed
LOC_Os07g05570Os.4890.1.S1_at11/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05570OsAffx.31218.1.S1_at1/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05580Os.4779.1.S1_at11/117+2612231..261462340S ribosomal protein S12, putative, expressed
LOC_Os07g05590OsAffx.16100.1.S1_at11/117+2621590..2623289hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5222.1.S1_at--139--10711Chr07:2597934..2597958 (25 bp)
TTGCTGGGTTCTTGTGCTATGCACA
LOC_Os07g05560
OsAffx.5222.1.S1_at--316--5451Chr07:2597880..2597904 (25 bp)
GAACGGTTGGTTGAGCTTGACCCTG
LOC_Os07g05560
OsAffx.5222.1.S1_at--308--10751Chr07:2597864..2597888 (25 bp)
TTGACCCTGGGCACAGTGGAGACTA
LOC_Os07g05560
OsAffx.5222.1.S1_at--106--2431Chr07:2597750..2597774 (25 bp)
AAAACCCTGGGCATAGTCTCGTTGA
LOC_Os07g05560
OsAffx.5222.1.S1_at--524--9511Chr07:2597734..2597758 (25 bp)
TCTCGTTGAGCTCCGAAACTCTGTA
LOC_Os07g05560
OsAffx.5222.1.S1_at--225--1471Chr07:2597623..2597647 (25 bp)
AGAAGGTTACATCCCTCGCACAAGT
LOC_Os07g05560
OsAffx.5222.1.S1_at--52--5991Chr07:2597565..2597589 (25 bp)
GAGACCGCCTTAAACTACCATAGTG
LOC_Os07g05560
OsAffx.5222.1.S1_at--675--9991Chr07:2597534..2597558 (25 bp)
TAGCCATTGCATTTGCCTTGCTGAA
LOC_Os07g05560
OsAffx.5222.1.S1_at--919--8991Chr07:2597513..2597537 (25 bp)
TGAAGTCTCTTCCAGGCATTCCTAT
LOC_Os07g05560
OsAffx.5222.1.S1_at--31--7631Chr07:2597459..2597483 (25 bp)
GGGACTGTCATGTTGCATTTAATCT
LOC_Os07g05560
OsAffx.5222.1.S1_at--878--7651Chr07:2597399..2597423 (25 bp)
GGGATCGAAGTAGGTTCCATCATTT
LOC_Os07g05560
Target Sequence 
TTGCTGGGTTCTTGTGCTATGCACAAGAAGCTGGAACTAGGGAAGGTTGCTTGGGAACGGTTGGTTGAGCTTGACCCTGG
GCACAGTGGAGACTATGTGCTCCTCTCCAACCTTTATGCTGCTGTTGGGATGTGGGCAGATGTTCATGTGCTTAGGAAGA
CAATGGTAAAAGATAGAGTGAGGAAAAACCCTGGGCATAGTCTCGTTGAGCTCCGAAACTCTGTATATGAATTTGTTATG
GGAGACAGGTCACATCCTGAGAGTGAGCAGATATATGAAATGCTGGCTGAGATAGCTGAGAGATTGAGGCGAGAAGGTTA
CATCCCTCGCACAAGTAACGTATTGGCAGATATAGAGGAGGAAGAGAAAGAGACCGCCTTAAACTACCATAGTGAGAGGC
TAGCCATTGCATTTGCCTTGCTGAAGTCTCTTCCAGGCATTCCTATCAGGATAATAAAGAACTTGAGGATGTGTGGGGAC
TGTCATGTTGCATTTAATCTAATATCAAAAGTTTATGATCGTGAAATCATTGTCAGGGATCGAAGTAGGTTCCATCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis