Browse Element(s) Details


Os.4890.1.S1_at

Description gb:AK065241.1
DB_XREF= gi:32975259
TID=Os.4890.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002I09, full insert sequence.
FL= gb:AK065241.1 gb:AK098912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0557011/11ERD4 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05520OsAffx.5221.1.S1_at9/117+2574494..2576913hypothetical protein
LOC_Os07g05530OsAffx.16099.1.S1_at11/117+2578517..2579311hypothetical protein
LOC_Os07g05540OsAffx.5954.4.S1_x_at4/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.1.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.5.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.3.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.2.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.25503.1.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05550Os.49224.1.S1_at11/117+2594019..2597171expressed protein
LOC_Os07g05560OsAffx.5222.1.S1_at11/117+2597362..2599140pentatricopeptide, putative, expressed
LOC_Os07g05570Os.4890.1.S1_at11/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05570OsAffx.31218.1.S1_at1/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05580Os.4779.1.S1_at11/117+2612231..261462340S ribosomal protein S12, putative, expressed
LOC_Os07g05590OsAffx.16100.1.S1_at11/117+2621590..2623289hypothetical protein
LOC_Os07g05600NANA7+2626653..2631386retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4890.1.S1_at--1150--9871Chr07:2600059..2600083 (25 bp)
TACATTTGCCATATGCGGTTCTACC
LOC_Os07g05570
Os.4890.1.S1_at--830--2751Chr07:2599989..2600013 (25 bp)
AAGACACGCCGAACATGGATGCCGT
LOC_Os07g05570
Os.4890.1.S1_at--677--7511Chr07:2599915..2599939 (25 bp)
GTGGATATCTTCGAAGACGCCCAGT
LOC_Os07g05570
Os.4890.1.S1_at--607--5871Chr07:2599875..2599899 (25 bp)
GAGCCCCATCCATCTAATGCAAGTG
LOC_Os07g05570
Os.4890.1.S1_at--224--2011Chr07:2599698..2599722 (25 bp)
ACTCGGGATTGCTTGCCTTCTTAAT
LOC_Os07g05570
Os.4890.1.S1_at--196--1031Chr07:2599637..2599661 (25 bp)
AGGTAGCTGCTGTGGATATCGCGCC
LOC_Os07g05570
Os.4890.1.S1_at--1094--6491Chr07:2599623..2599647 (25 bp)
GATATCGCGCCTTTTTAAGTTTAAG
LOC_Os07g05570
Os.4890.1.S1_at--372--6751Chr07:2599586..2599610 (25 bp)
GTTCATGCTCGTGGTGACTGCTAAA
LOC_Os07g05570
Os.4890.1.S1_at--30--4851Chr07:2599567..2599591 (25 bp)
GCTAAATCTAGTCCTCTTATGTGTA
LOC_Os07g05570
Os.4890.1.S1_at--744--2271Chr07:2599531..2599555 (25 bp)
AAATCTGTTGCCTAGTGCACCGTAA
LOC_Os07g05570
Os.4890.1.S1_at--831--7331Chr07:2599517..2599541 (25 bp)
GTGCACCGTAACCTGATTGATAATT
LOC_Os07g05570
Target Sequence 
TACATTTGCCATATGCGGTTCTACCCGGCGTTCGCCAAGACCCCTCTCGAGGTGGTTCAGCACAACGTGAAAGACACGCC
GAACATGGATGCCGTCTACACCTCCTACATCCCNGCTTGCCTGAAGCCTGAGAAGCTAGAGGATGTGGATATCTTCGAAG
ACGCCCAGTTNGCACACCACCTCCAGAGCCCCATCCATCTAATGCAAGTGCTGGTTGCTTGTGTCGAGACCGGAGAGTAT
TACTCATCATCACNGCAAACGAATTTCTGATGAATTTCCACGTTGAAATGAACCCCTNTGAAGTGTGAATCTGCTATTGC
CAGGATAGGAAAACTTATGTNATGTCCGTGTACATAATATGCACTCGGGATTGCTTGCCTTCTTAATGTGTGTGTTGAGG
TTTATTCTTTACTTCATAGTTCTAGGTAGCTGCTGTGGATATCGCGCCTTTTTAAGTTTAAGTTTCTATCATATGTTCAT
GCTCGTGGTGACTGCTAAATCTAGTCCTCTTATGTGTAACAAAACTCAGAAATCTGTTGCCTAGTGCACCGTAACCTGAT
TGATAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis