Browse Element(s) Details


OsAffx.16099.1.S1_at

Description tigr:9635.m00491
TID=OsAffx.16099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0553011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05490NANA7+2559634..2562042transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05500OsAffx.28291.1.S1_at10/117+2563740..2565574hypothetical protein
LOC_Os07g05500Os.4779.1.S1_at1/117+2563740..2565574hypothetical protein
LOC_Os07g05510OsAffx.16098.1.S1_at10/117+2567834..2568853hypothetical protein
LOC_Os07g05520OsAffx.5221.1.S1_at9/117+2574494..2576913hypothetical protein
LOC_Os07g05530OsAffx.16099.1.S1_at11/117+2578517..2579311hypothetical protein
LOC_Os07g05540OsAffx.5954.4.S1_x_at4/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.1.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.5.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.3.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.2.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.25503.1.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05550Os.49224.1.S1_at11/117+2594019..2597171expressed protein
LOC_Os07g05560OsAffx.5222.1.S1_at11/117+2597362..2599140pentatricopeptide, putative, expressed
LOC_Os07g05570Os.4890.1.S1_at11/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05570OsAffx.31218.1.S1_at1/117+2599490..2604517ERD4 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16099.1.S1_at--971--4791Chr07:2578559..2578583 (25 bp)
GCTCGACGGTGGATGGAACAAGCTC
LOC_Os07g05530
OsAffx.16099.1.S1_at--927--7991Chr07:2578569..2578593 (25 bp)
GGATGGAACAAGCTCGACCACGCCA
LOC_Os07g05530
OsAffx.16099.1.S1_at--714--2451Chr07:2578575..2578599 (25 bp)
AACAAGCTCGACCACGCCAGTACTG
LOC_Os07g05530
OsAffx.16099.1.S1_at--314--4351Chr07:2578591..2578615 (25 bp)
CCAGTACTGCAACCACGAGGAGGAG
LOC_Os07g05530
OsAffx.16099.1.S1_at--748--971Chr07:2578661..2578685 (25 bp)
AGGAGCTCATGCTCACTGCTGGGCG
LOC_Os07g05530
OsAffx.16099.1.S1_at--512--5911Chr07:2578663..2578687 (25 bp)
GAGCTCATGCTCACTGCTGGGCGGC
LOC_Os07g05530
OsAffx.16099.1.S1_at--157--7571Chr07:2578681..2578705 (25 bp)
GGGCGGCGCCATAGGTGGGTCGGTA
LOC_Os07g05530
OsAffx.16099.1.S1_at--930--3971Chr07:2578732..2578756 (25 bp)
CGGTGGCGTCGAGCGTTGTGGTCGA
LOC_Os07g05530
OsAffx.16099.1.S1_at--752--8252Chr07:2578857..2578881 (25 bp)
GGCAGCGGCGCCACGAACTTGTAAA
LOC_Os07g05530
OsAffx.16099.1.S1_at--72--4711Chr07:2578861..2578885 (25 bp)
GCGGCGCCACGAACTTGTAAAATCA
LOC_Os07g05530
OsAffx.16099.1.S1_at--435--10871Chr07:2578949..2578973 (25 bp)
TTGGAATATTATTCTCGAAGTGGTT
LOC_Os07g05530
Target Sequence 
GCTCGACGGTGGATGGAACAAGCTCGACCACGCCAGTACTGCAACCACGAGGAGGAGCTTGACGGCGGAGGAAACGAGCT
TGAGCTCACCAGCACCATGGGGAGGAGCTCATGCTCACTGCTGGGCGGCGCCATAGGTGGGTCGGTAGGTGGCGGGCTGG
GGTTGTTGGCGGGCGGTGGCGTCGAGCGTTGTGGTCGAACGCTGGGGGAGAGCAGCGACGTCGGGCACTGGGGGTGGGTG
GTGGCGACGCTGCGTCGGGCGCTGGGGGAGAGCAGCGACGTCGGGTGCTGGGGTGGGTGGCAGCGGCGCCACGAACTTGT
AAAATCAAAGATTATTGGTTTTGATATTTGGAATATTATTCTCGAAGTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis