Browse Element(s) Details


OsAffx.28291.1.S1_at

Description tigr:9635.m00488
TID=OsAffx.28291.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0550010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05470Os.18700.1.S1_at11/117+2537720..2543969leucine-rich repeat family protein, putative, expressed
LOC_Os07g05480Os.12056.1.S1_at11/117+2544727..2545713Photosystem I reaction center subunit psaK, chloroplast precursor, putative, expressed
LOC_Os07g05490NANA7+2559634..2562042transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05500OsAffx.28291.1.S1_at10/117+2563740..2565574hypothetical protein
LOC_Os07g05500Os.4779.1.S1_at1/117+2563740..2565574hypothetical protein
LOC_Os07g05510OsAffx.16098.1.S1_at10/117+2567834..2568853hypothetical protein
LOC_Os07g05520OsAffx.5221.1.S1_at9/117+2574494..2576913hypothetical protein
LOC_Os07g05530OsAffx.16099.1.S1_at11/117+2578517..2579311hypothetical protein
LOC_Os07g05540OsAffx.5954.4.S1_x_at4/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.1.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.5.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.3.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.2.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.25503.1.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28291.1.S1_at--940--9611Chr07:2564233..2564257 (25 bp)
TCATGGTGGGATCCCAAAGGGCCCA
LOC_Os07g05500
OsAffx.28291.1.S1_at--2--2331Chr07:2564248..2564272 (25 bp)
AAAGGGCCCACATCGCTTTGGCTCG
LOC_Os07g05500
OsAffx.28291.1.S1_at--1021--10231Chr07:2564264..2564288 (25 bp)
TTTGGCTCGCCTGGCAAGGATCTAC
LOC_Os07g05500
OsAffx.28291.1.S1_at--713--8071NONE
GGAGCTGGAGACCTGGAATCCTTAT
NONE
OsAffx.28291.1.S1_at--855--5511Chr07:2565310..2565334 (25 bp)
GAAAATGCTCGCAAGTTACCTCGAA
LOC_Os07g05500
OsAffx.28291.1.S1_at--1149--7211Chr07:2565345..2565369 (25 bp)
GTCGACAGTCGACTATATCACTTGG
LOC_Os07g05500
OsAffx.28291.1.S1_at--783--10171Chr07:2565360..2565384 (25 bp)
TATCACTTGGCTTTGCAGGCATGCA
LOC_Os07g05500
OsAffx.28291.1.S1_at--1100--3611Chr07:2565389..2565413 (25 bp)
CTTGTATGCACCTTTGTGGCTGTGA
LOC_Os07g05500
OsAffx.28291.1.S1_at--823--4411Chr07:2565430..2565454 (25 bp)
GCCAGCTGAAGCCATCTACAAGAAT
LOC_Os07g05500
OsAffx.28291.1.S1_at--630--1051Chr07:2565468..2565492 (25 bp)
AGGTGTTCTTCAAGACCTCACTTCT
LOC_Os07g05500
OsAffx.28291.1.S1_at--920--1371Chr07:2565480..2565504 (25 bp)
AGACCTCACTTCTGGCCGTGGGAGA
LOC_Os07g05500
Target Sequence 
TCATGGTGGGATCCCAAAGGGCCCACATCGCTTTGGCTCGCCTGGCAAGGATCTACCGGGGCGATGGTTCCACCATGCCG
CGGGTGGCCACCGCCGCCGACATGTCCGTCGTGGAGGCGCCTTCATCTTCTTCTTCGCCCTCGCGTGCTCACTGTGAAGG
CCAGCAAGGCTGTGAAGGATGGAGCTGGAGACCTGGAATCCTTATTGGGAAAATGCTCGCAAGTTACCTCGAAAAGACTA
GGCGTCGACAGTCGACTATATCACTTGGCTTTGCAGGCATGCAGGTGCTTGTATGCACCTTTGTGGCTGTGAGGTTCGAA
GGGGCAACGCCAGCTGAAGCCATCTACAAGAATCTGAGTTATCTGGAGGTGTTCTTCAAGACCTCACTTCTGGCCGTGGG
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis