Browse Element(s) Details


Os.18700.1.S1_at

Description gb:AK062246.1
DB_XREF= gi:32972264
TID=Os.18700.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.18700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F05, full insert sequence.
FL= gb:AK062246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0547011/11leucine-rich repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05460OsAffx.28290.1.S1_at11/117+2515614..2517343Sulfotransferase domain containing protein
LOC_Os07g05470Os.18700.1.S1_at11/117+2537720..2543969leucine-rich repeat family protein, putative, expressed
LOC_Os07g05480Os.12056.1.S1_at11/117+2544727..2545713Photosystem I reaction center subunit psaK, chloroplast precursor, putative, expressed
LOC_Os07g05490NANA7+2559634..2562042transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05500OsAffx.28291.1.S1_at10/117+2563740..2565574hypothetical protein
LOC_Os07g05500Os.4779.1.S1_at1/117+2563740..2565574hypothetical protein
LOC_Os07g05510OsAffx.16098.1.S1_at10/117+2567834..2568853hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010102biological_processlateral root morphogenesis
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18700.1.S1_at--96--7051Chr07:2543276..2543300 (25 bp)
GTAAAGCCTGGATCCAAGGCATCAT
LOC_Os07g05470
Os.18700.1.S1_at--211--931Chr07:2543292..2543316 (25 bp)
AGGCATCATTCCCAACTACAGAAGT
LOC_Os07g05470
Os.18700.1.S1_at--835--1811Chr07:2543335..2543465 (25 bp)
ACCCTTCCATGTTGAGCTATATCGC
LOC_Os07g05470
Os.18700.1.S1_at--1157--6431Chr07:2543469..2543493 (25 bp)
GATCAGCACCGCTTCAAGATTGTTG
LOC_Os07g05470
Os.18700.1.S1_at--251--10751Chr07:2543512..2543536 (25 bp)
TTGACTTGATGGTGCAAACTCGGCA
LOC_Os07g05470
Os.18700.1.S1_at--464--2391Chr07:2543527..2543551 (25 bp)
AAACTCGGCACATGCGAGACGTCAT
LOC_Os07g05470
Os.18700.1.S1_at--832--4071Chr07:2543541..2543565 (25 bp)
CGAGACGTCATCATTCTGGTGATTA
LOC_Os07g05470
Os.18700.1.S1_at--883--1311Chr07:2543565..2543589 (25 bp)
AGAGGTCTTGCTCAAAAGTTCAACA
LOC_Os07g05470
Os.18700.1.S1_at--565--2831Chr07:2543580..2543604 (25 bp)
AAGTTCAACAGCACATCTCTCAACT
LOC_Os07g05470
Os.18700.1.S1_at--1001--10851Chr07:2543737..2543761 (25 bp)
TTGGAGCGTGGCAGCTTTTGTGTAT
LOC_Os07g05470
Os.18700.1.S1_at--863--3071Chr07:2543800..2543824 (25 bp)
AATCAGGAGCGGGTTGCTCTTCTGA
LOC_Os07g05470
Target Sequence 
GTAAAGCCTGGATCCAAGGCATCATTCCCAACTACAGAAGTGCGAGGAACATATGTTCCACCCTTCCATGTTGAGCTATA
TCGCAACGATCAGCACCGCTTCAAGATTGTTGTTGATGGTGAGAGCGAAGTTGACTTGATGGTGCAAACTCGGCACATGC
GAGACGTCATCATTCTGGTGATTAGAGGTCTTGCTCAAAAGTTCAACAGCACATCTCTCAACTCACTCCTCAAGATAGAA
GCATGAAGATCGAGTTGCCAACCTGATATAACTTACAGTATGAAACCGATTAGAAAAGGTTGTTCAGTATCGATTCAAGT
TGTTTAGTTTGGAGGATGTGTAATATTTATAGGATTTGGAGCGTGGCAGCTTTTGTGTATGGGTGTGGTTGAGTGTGTTA
AAGTTTTTCTTTTTCTCAAATCAGGAGCGGGTTGCTCTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis