Browse Element(s) Details


OsAffx.28290.1.S1_at

Description tigr:9635.m00482
TID=OsAffx.28290.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0546011/11Sulfotransferase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05430OsAffx.915.1.S1_at8/117+2495670..2499971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05440Os.50940.1.S1_a_at11/117+2500963..2506064retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05450OsAffx.28290.2.S1_at10/117+2507589..2508971Sulfotransferase domain containing protein
LOC_Os07g05460OsAffx.28290.1.S1_at11/117+2515614..2517343Sulfotransferase domain containing protein
LOC_Os07g05470Os.18700.1.S1_at11/117+2537720..2543969leucine-rich repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28290.1.S1_at--1088--9651Chr07:2516823..2516847 (25 bp)
TCACCGATAACCCTCACTGTAAAAT
LOC_Os07g05460
OsAffx.28290.1.S1_at--547--8131Chr07:2516106..2516130 (25 bp)
GGACATGATAGTTTCCCTGTGGCAC
LOC_Os07g05460
OsAffx.28290.1.S1_at--872--10651Chr07:2516094..2516118 (25 bp)
TTCCCTGTGGCACTTCGTGAGAAGA
LOC_Os07g05460
OsAffx.28290.1.S1_at--298--1471Chr07:2516072..2516096 (25 bp)
AGAAGGCTACCGGAGATCCCATTCC
LOC_Os07g05460
OsAffx.28290.1.S1_at--406--5471Chr07:2516045..2516069 (25 bp)
GAACTGTTCGAGTCTGCTTGCGAGG
LOC_Os07g05460
OsAffx.28290.1.S1_at--520--1851Chr07:2515961..2515985 (25 bp)
ACGAGGCCAGAGACGGTGTTGTTCC
LOC_Os07g05460
OsAffx.28290.1.S1_at--972--2771Chr07:2515927..2515951 (25 bp)
AAGAGCTGCTACATGACCCGGCTGA
LOC_Os07g05460
OsAffx.28290.1.S1_at--486--291Chr07:2515903..2515927 (25 bp)
ATAGCGTCAGGAAGCTGGCTCGGTT
LOC_Os07g05460
OsAffx.28290.1.S1_at--401--2071Chr07:2515828..2515852 (25 bp)
ACATTGTGAGGCTCTGCAGTTTCGA
LOC_Os07g05460
OsAffx.28290.1.S1_at--1070--9811Chr07:2515739..2515763 (25 bp)
TACACCAATGGGTCCTTCTTCAGGA
LOC_Os07g05460
OsAffx.28290.1.S1_at--605--4351Chr07:2515679..2515703 (25 bp)
CCAGAGATGGCTGAACGCGCGGCTA
LOC_Os07g05460
Target Sequence 
TCACCGATAACCCTCACTGTAAAATCATCTATATATGCAGGGATCCAAAGGACATGATAGTTTCCCTGTGGCACTTCGTG
AGAAGAAGGCTACCGGAGATCCCATTCCTCGAACTGTTCGAGTCTGCTTGCGAGGGCAGATGCTTGAGCAGCCCAATCTG
GGACCATATCCTCGGCTACTGGAATGCGAGCAAGACGAGGCCAGAGACGGTGTTGTTCCTGAGGTACGAAGAGCTGCTAC
ATGACCCGGCTGATAGCGTCAGGAAGCTGGCTCGGTTCGTCGGGCAGCCATTCTCGCCCGAGGAGGAGGAAGCCAGCGAC
GTGGAAGACATTGTGAGGCTCTGCAGTTTCGAGCAGATGAAGAACCTGGAGGTGAACAGGGCAGCTGGCCTGTCTCCTGC
GCTCCAGCAAAACGCCTACACCAATGGGTCCTTCTTCAGGAAAGGGGGCACAGGAGATTGGGCAAATCATATGACACCAG
AGATGGCTGAACGCGCGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis