Browse Element(s) Details


Os.12056.1.S1_at

Description gb:AK058788.1
DB_XREF= gi:32968806
TID=Os.12056.1
CNT=134
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.12056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23056 photosystem I protein-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-E09, full insert sequence.
FL= gb:AY224448.1 gb:AK058788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0548011/11Photosystem I reaction center subunit psaK, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05470Os.18700.1.S1_at11/117+2537720..2543969leucine-rich repeat family protein, putative, expressed
LOC_Os07g05480Os.12056.1.S1_at11/117+2544727..2545713Photosystem I reaction center subunit psaK, chloroplast precursor, putative, expressed
LOC_Os07g05490NANA7+2559634..2562042transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05500OsAffx.28291.1.S1_at10/117+2563740..2565574hypothetical protein
LOC_Os07g05500Os.4779.1.S1_at1/117+2563740..2565574hypothetical protein
LOC_Os07g05510OsAffx.16098.1.S1_at10/117+2567834..2568853hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015979biological_processphotosynthesis
GO:0009522cellular_componentphotosystem I
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12056.1.S1_at--337--10291Chr07:2544776..2544800 (25 bp)
TTTCCTCGAAACTCAGCTGCAAGGA
LOC_Os07g05480
Os.12056.1.S1_at--367--1471Chr07:2544806..2544830 (25 bp)
AGAAGGTAGGCTCCAGCCATGGCTT
LOC_Os07g05480
Os.12056.1.S1_at--192--9251Chr07:2544889..2545030 (25 bp)
TCCTAGGTCCATGGTGACGCTGCCA
LOC_Os07g05480
Os.12056.1.S1_at--14--1491Chr07:2545043..2545067 (25 bp)
AGCAAGAAGAGGTCCCAGGGCATCC
LOC_Os07g05480
Os.12056.1.S1_at--127--1091Chr07:2545059..2545083 (25 bp)
AGGGCATCCGGTGCGACTACATCGG
LOC_Os07g05480
Os.12056.1.S1_at--861--8311Chr07:2545082..2545224 (25 bp)
GGCTCAGCCACCAACGTTATCATGG
LOC_Os07g05480
Os.12056.1.S1_at--622--4451Chr07:2545420..2545444 (25 bp)
GCCTCAAGAACATCGGCGTCCTGGA
LOC_Os07g05480
Os.12056.1.S1_at--520--7091Chr07:2545478..2545502 (25 bp)
GTCACACGAATCAATACTCCTATGT
LOC_Os07g05480
Os.12056.1.S1_at--610--7071Chr07:2545503..2545527 (25 bp)
GTAATCGATGCATGAGTGCCTGTGT
LOC_Os07g05480
Os.12056.1.S1_at--915--1131Chr07:2545517..2545541 (25 bp)
AGTGCCTGTGTGATGGACGATGTAA
LOC_Os07g05480
Os.12056.1.S1_at--588--10831Chr07:2545554..2545578 (25 bp)
TTGTGCGTGGAATCAGTGCTTATCT
LOC_Os07g05480
Target Sequence 
TTTCCTCGAAACTCAGCTGCAAGGAGAAGGAGAAGGTAGGCTCCAGCCATGGCTTCCCAGCTCTCCGCCGCCACATCCGT
GCCGCAGTTCCATGGCCTCCGGACCTACTCCTCTCCTAGGTCCATGGTGACGCTGCCATCGTTGAGGATGAGCAAGAAGA
GGTCCCAGGGCATCCGGTGCGACTACATCGGCTCAGCCACCAACGTTATCATGGTGACGACGACGACGCTGATGCTGTTC
GCGGGGAGGTTCGGGCTGGCGCCGTCGGCGAACAGGAAGTCGACGGCGGGGCTGAAGCTGGAGGCGCGCGACTCCGGCCT
GCAGACCGGCGACCCCGCCGGGTTCACGCTCGCCGACACGCTGGCCTGCGGCGCCGTCGGCCACATCATGGGCGTCGGCG
TCGTCCTCGGCCTCAAGAACATCGGCGTCCTGGACCAGATCATCGGCTAAATCAAATTCATTAAGCTAGTCACACGAATC
AATACTCCTATGTGTAATCGATGCATGAGTGCCTGTGTGATGGACGATGTAATGATCATGTAAATTGTGCGTGGAATCAG
TGCTTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis