Browse Element(s) Details


Os.9438.1.S1_at

Description gb:AK120961.1
DB_XREF= gi:37990584
TID=Os.9438.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039L12, full insert sequence.
FL= gb:AK101171.1 gb:AK120961.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5108011/11Glutamate decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51030Os.272.1.S1_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51030Os.47842.1.A1_s_at11/113+29118715..29126579Phytochrome A, putative, expressed
LOC_Os03g51040OsAffx.13452.1.S1_at10/113+29131475..29133714Protein kinase domain containing protein
LOC_Os03g51050Os.38367.1.S1_s_at11/113+29135580..29140934Peptide transporter PTR2, putative, expressed
LOC_Os03g51060NANA3+29141702..29142233Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os03g51080Os.9438.1.S1_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51080Os.17946.1.A1_x_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51090Os.20600.1.S1_x_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51090Os.20600.1.S1_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51100OsAffx.13453.1.S1_at10/113+29166962..29167964hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006536biological_processglutamate metabolism
GO:0006807biological_processnitrogen compound metabolism
GO:0004351molecular_functionglutamate decarboxylase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9438.1.S1_at--161--4151Chr03:29158853..29158877 (25 bp)
CGCGAGGTGATCTCCCTCTGGAAGA
LOC_Os03g51080
Os.9438.1.S1_at--847--9831Chr03:29158916..29158940 (25 bp)
TAAAGCAAGTCAGCTGCGCAGCGGG
LOC_Os03g51080
Os.9438.1.S1_at--703--811Chr03:29158958..29158982 (25 bp)
ATGGTCCACTTCGTAATTGCGACTT
LOC_Os03g51080
Os.9438.1.S1_at--585--8951Chr03:29158975..29158999 (25 bp)
TGCGACTTCTTAATTTTTACCGTGT
LOC_Os03g51080
Os.9438.1.S1_at--649--491Chr03:29159002..29159026 (25 bp)
ATCGGTTTACCGTCTCAAGTCTGCT
LOC_Os03g51080
Os.9438.1.S1_at--715--9291Chr03:29159031..29159055 (25 bp)
TCCGATTTTCGGATTGATGCTGCTT
LOC_Os03g51080
Os.9438.1.S1_at--1030--5211Chr03:29159091..29159115 (25 bp)
GAATAGTTCCGACTCAATACGAAGC
LOC_Os03g51080
Os.9438.1.S1_at--216--5391Chr03:29159111..29159135 (25 bp)
GAAGCATTGCCTGTATAAGTCGAAC
LOC_Os03g51080
Os.9438.1.S1_at--570--1151Chr03:29159128..29159152 (25 bp)
AGTCGAACACGGGATCATGCATTTT
LOC_Os03g51080
Os.9438.1.S1_at--988--1111Chr03:29159181..29159205 (25 bp)
AGTGATGCTCCATCTCTACTCTGAA
LOC_Os03g51080
Os.9438.1.S1_at--207--471Chr03:29159261..29159285 (25 bp)
ATGAAAATTACCATCTCCGTCTCGT
LOC_Os03g51080
Target Sequence 
CGCGAGGTGATCTCCCTCTGGAAGAGGGCCGTGCTGGCCAAGAAGAAGACCAACGGCGTCTGCTAAAGCAAGTCAGCTGC
GCAGCGGGGATCGTATACTATTATTATGGTCCACTTCGTAATTGCGACTTCTTAATTTTTACCGTGTCGATCGGTTTACC
GTCTCAAGTCTGCTCTCATCCGATTTTCGGATTGATGCTGCTTAATTATGTACCAAGTTAATTAATTCTTAGAGGACGGA
ATAGTTCCGACTCAATACGAAGCATTGCCTGTATAAGTCGAACACGGGATCATGCATTTTACGTTGGGTGTGTAGCAGTG
AATTGATCAGTGATGCTCCATCTCTACTCTGAACGTGCTACCTCCATTCCAAAAAANNGAAAAAAAAACTTTTATGAACG
AATTTGTGTATGAAAATTACCATCTCCGTCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis