Browse Element(s) Details


Os.9500.1.S1_s_at

Description gb:CR290986
DB_XREF= gi:44677552
DB_XREF=CR290986
CLONE=p642b11p3
TID=Os.9500.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9500 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3217011/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32110Os.45774.1.S1_at1/117+19073800..19076846transposon protein, putative, unclassified
LOC_Os07g32120NANA7+19081963..19082994Transcription factor TFIIB repeat family protein
LOC_Os07g32140OsAffx.16517.1.S1_at11/117+19089523..19090179hypothetical protein
LOC_Os07g32150Os.50411.1.S1_at1/117+19093612..19095269retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g32160OsAffx.16518.1.S1_at11/117+19096863..19097393hypothetical protein
LOC_Os07g32170Os.9500.1.S1_s_at11/117+19098270..19101600SBP domain containing protein, expressed
LOC_Os07g32170OsAffx.16519.1.S1_at11/117+19098270..19101600SBP domain containing protein, expressed
LOC_Os07g32180OsAffx.19542.3.S1_x_at6/117+19111599..19115821retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9500.1.S1_s_at--644--8171Chr07:19098786..19098810 (25 bp)
GGAACCCGCCGTTCCAGATCAGATA
LOC_Os07g32170
Os.9500.1.S1_s_at--1058--9911Chr07:19098638..19098662 (25 bp)
TACGTCCCTTCTTCCTCAAATCAAT
LOC_Os07g32170
Os.9500.1.S1_s_at--546--431Chr07:19098598..19098622 (25 bp)
ATCTATTTATCTATCCCTGAATCTA
LOC_Os07g32170
Os.9500.1.S1_s_at--702--3671Chr07:19098558..19098582 (25 bp)
CTTTGCTGCTGCTGATTAACTGGCA
LOC_Os07g32170
Os.9500.1.S1_s_at--815--10491Chr07:19098543..19098567 (25 bp)
TTAACTGGCAGTGTGATCATCTCCC
LOC_Os07g32170
Os.9500.1.S1_s_at--157--9491Chr07:19098454..19098478 (25 bp)
TCTGCCACAACCCTAAGCTAATTGT
LOC_Os07g32170
Os.9500.1.S1_s_at--793--5011Chr07:19098415..19098439 (25 bp)
GCAGGTGTTCTAGGGATTCTCTCTC
LOC_Os07g32170
Os.9500.1.S1_s_at--866--9891Chr07:19098353..19098377 (25 bp)
TACTATTGCCTTTGCCCAACAGAAA
LOC_Os07g32170
Os.9500.1.S1_s_at--1037--3411Chr07:19098334..19098358 (25 bp)
CAGAAACTTGTAGGCTGCAGTGTGC
LOC_Os07g32170
Os.9500.1.S1_s_at--226--4771Chr07:19098321..19098345 (25 bp)
GCTGCAGTGTGCCTATGTATGCTGT
LOC_Os07g32170
Os.9500.1.S1_s_at--162--4311Chr07:19098310..19098334 (25 bp)
CCTATGTATGCTGTTGTGCCGGGAT
LOC_Os07g32170
Target Sequence 
GGAACCCGCCGTTCCAGATCAGATAACCCTACCTAAGCATGCTCCCTCTCTTCTGTCANCNANCNANGCTANTGTNAGTN
TGTNGTGTNNCGTGCCACTANCTACTANCTACATGTCTACATCGATCTNNNTCTACNCTATATATNNATNCCACCACNTA
CGTCCCTTCTTCCTCAAATCAATCAAATCTATCTATCTATCTATTTATCTATCCCTGAATCTATCTNNATCCGGTGTGCT
TTGCTGCTGCTGATTAACTGGCAGTGTGATCATCTCCCTCTACTGCTGCTANATATANGCAGTGCTATGCTGGAGAGGCA
TAAATGTGCTATATNTATGTTCTCTGCCACAACCCTAAGCTAATTGTAACCTGTTGATTAAGCAGGTGTTCTAGGGATTC
TCTCTCTCTCTCTCTGTGTGAGGGTGTGTTTGATGTGTAATTGTACTATTGCCTTTGCCCAACAGAAACTTGTAGGCTGC
AGTGTGCCTATGTATGCTGTTGTGCCGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9500.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis