Browse Element(s) Details


OsAffx.16517.1.S1_at

Description tigr:9635.m03156
TID=OsAffx.16517.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3214011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32080OsAffx.16516.1.S1_x_at11/117+19066616..19067680Transcription factor TFIIB repeat family protein
LOC_Os07g32090NANA7+19068709..19071327hypothetical protein
LOC_Os07g32100OsAffx.31018.3.S1_x_at11/117+19071668..19073089hypothetical protein
LOC_Os07g32100OsAffx.31018.4.S1_at4/117+19071668..19073089hypothetical protein
LOC_Os07g32100OsAffx.31018.2.S1_x_at1/117+19071668..19073089hypothetical protein
LOC_Os07g32110Os.45774.1.S1_at1/117+19073800..19076846transposon protein, putative, unclassified
LOC_Os07g32120NANA7+19081963..19082994Transcription factor TFIIB repeat family protein
LOC_Os07g32140OsAffx.16517.1.S1_at11/117+19089523..19090179hypothetical protein
LOC_Os07g32150Os.50411.1.S1_at1/117+19093612..19095269retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g32160OsAffx.16518.1.S1_at11/117+19096863..19097393hypothetical protein
LOC_Os07g32170Os.9500.1.S1_s_at11/117+19098270..19101600SBP domain containing protein, expressed
LOC_Os07g32170OsAffx.16519.1.S1_at11/117+19098270..19101600SBP domain containing protein, expressed
LOC_Os07g32180OsAffx.19542.3.S1_x_at6/117+19111599..19115821retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16517.1.S1_at--632--8091Chr07:19090062..19090086 (25 bp)
GGACGCGTCGCGAAGAGGTCCTCGA
LOC_Os07g32140
OsAffx.16517.1.S1_at--222--10551Chr07:19090025..19090049 (25 bp)
TTCATCCTTCGCCTGACGACGAGCG
LOC_Os07g32140
OsAffx.16517.1.S1_at--843--9151Chr07:19089875..19089899 (25 bp)
TGCGCACCCGCGTAGGCAAGATCAG
LOC_Os07g32140
OsAffx.16517.1.S1_at--555--10071Chr07:19089863..19089887 (25 bp)
TAGGCAAGATCAGCGTCACGGGCCA
LOC_Os07g32140
OsAffx.16517.1.S1_at--102--2811Chr07:19089858..19089882 (25 bp)
AAGATCAGCGTCACGGGCCACCAGA
LOC_Os07g32140
OsAffx.16517.1.S1_at--1070--3191Chr07:19089760..19089784 (25 bp)
CAAGGTCGGGTTCCCGCACGACGAT
LOC_Os07g32140
OsAffx.16517.1.S1_at--1038--10531Chr07:19089701..19089725 (25 bp)
TTCAGGTGATTCTGCAGCCTGCAGC
LOC_Os07g32140
OsAffx.16517.1.S1_at--95--891Chr07:19089619..19089643 (25 bp)
AGGCCATGACCACGCGCGAAGTCGA
LOC_Os07g32140
OsAffx.16517.1.S1_at--631--5851Chr07:19089612..19089636 (25 bp)
GACCACGCGCGAAGTCGAAGGACAA
LOC_Os07g32140
OsAffx.16517.1.S1_at--1029--7411Chr07:19089587..19089611 (25 bp)
GTGTACTGCCCGGAAGACCGACGGT
LOC_Os07g32140
OsAffx.16517.1.S1_at--715--5171Chr07:19089557..19089581 (25 bp)
GCAAGTCTCTGCGACTGCTGACGGC
LOC_Os07g32140
Target Sequence 
GGACGCGTCGCGAAGAGGTCCTCGACGCCTCCTCCACTTCATCCTTCGCCTGACGACGAGCGCTCCGCCGACGTCCTGGC
CATGCCGGCGCCGCCTCCCGTGCCCGGTCGTCCCGCGACGTCGGCCGCCGCCGCTGCCACCGCCAACGAGCCGACGCCGA
CGATCGAGAAGGGCACGCAGGTGAGCGTGCGCACCCGCGTAGGCAAGATCAGCGTCACGGGCCACCAGACGCGCCACCTC
GTGCTCCGGCTCGACGCGGTCGTCGTCTCCGCCGACGAGGACGGCTTCCTCGACGTCGTCTACAAGGTCGGGTTCCCGCA
CGACGATCCCTTCCGCCCCGTGCGCGTTGCCAGGGGCCAGGTTCAGGTGATTCTGCAGCCTGCAGCCGCGGCGCCGTCCG
TCGACTCCTCCACGGCCACCGACGCCGCCGTGCGCCGCGCTCCAGGCCATGACCACGCGCGAAGTCGAAGGACAAGTGTA
CTGCCCGGAAGACCGACGGTCGCCGGCAAGTCTCTGCGACTGCTGACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis