Browse Element(s) Details


Os.9547.1.S1_at

Description gb:AB096863.1
DB_XREF= gi:25553519
GEN=OsUGE-2
TID=Os.9547.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9547 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsUGE-2 mRNA for putative UDP-glucose 4-epimerase, complete cds.
PROD=putative UDP-glucose 4-epimerase
FL= gb:AK066269.1 gb:AB096863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2873011/11UDP-glucose 4-epimerase GEPI48, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28710Os.26411.2.A1_at11/118+17425619..17427319Protein kinase domain containing protein, expressed
LOC_Os08g28710Os.26411.1.A1_at11/118+17425619..17427319Protein kinase domain containing protein, expressed
LOC_Os08g28710Os.26411.2.A1_x_at11/118+17425619..17427319Protein kinase domain containing protein, expressed
LOC_Os08g28720NANA8+17432161..17433393retrotransposon, putative, centromere-specific
LOC_Os08g28730Os.9547.1.S1_at11/118+17437063..17443560UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os08g28730Os.55530.1.S1_at1/118+17437063..17443560UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os08g28740NANA8+17448264..17450288expressed protein
LOC_Os08g28750Os.46314.3.S1_at4/118+17452803..17459530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28750OsAffx.265.1.S1_at1/118+17452803..17459530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28750Os.41248.2.A1_at1/118+17452803..17459530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28760NANA8+17460906..17463748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28770NANA8+17465103..17470360retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010053biological_processroot epidermal cell differentiation
GO:0046369biological_processgalactose biosynthesis
GO:0005829cellular_componentcytosol
GO:0003978molecular_functionUDP-glucose 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9547.1.S1_at--354--831Chr08:17437801..17437825 (25 bp)
ATGGATACGGGTCACTTGACTCCAC
LOC_Os08g28730
Os.9547.1.S1_at--726--8131Chr08:17437766..17437790 (25 bp)
GGACACCACTCGTACGGATCAATTG
LOC_Os08g28730
Os.9547.1.S1_at--903--6451Chr08:17437750..17437774 (25 bp)
GATCAATTGGCTCTCCCAAGCAGAA
LOC_Os08g28730
Os.9547.1.S1_at--368--6491Chr08:17437672..17437696 (25 bp)
GATATGGACTGGTCGACTCTGCCAA
LOC_Os08g28730
Os.9547.1.S1_at--110--8931Chr08:17437622..17437646 (25 bp)
TGACCATGCTTCAGCCTTGAGTTGG
LOC_Os08g28730
Os.9547.1.S1_at--470--8671Chr08:17437595..17437619 (25 bp)
TGTGGGCTCCTTGTACATGTGATGT
LOC_Os08g28730
Os.9547.1.S1_at--1147--8831Chr08:17437560..17437584 (25 bp)
TGATCCGAGATCGTTGCAGGTCAAC
LOC_Os08g28730
Os.9547.1.S1_at--659--6611Chr08:17437531..17437555 (25 bp)
GATTGGCAGGTCACACGAACATGGT
LOC_Os08g28730
Os.9547.1.S1_at--511--10571Chr08:17437491..17437515 (25 bp)
TTCTTTCATTGTTCATCGTTGGCTG
LOC_Os08g28730
Os.9547.1.S1_at--1046--10851Chr08:17437473..17437497 (25 bp)
TTGGCTGAAGAATCCCACTGCCTGT
LOC_Os08g28730
Os.9547.1.S1_at--400--8211Chr08:17437392..17437416 (25 bp)
GGAATGTGACATTTAGCCAACCAGC
LOC_Os08g28730
Target Sequence 
ATGGATACGGGTCACTTGACTCCACCAAGCAGAACGGACACCACTCGTACGGATCAATTGGCTCTCCCAAGCAGAATGGC
CACTGCACAAATGGATTTTCTGAATCCACTAGGCATAATGGTCACAACGGATATGGACTGGTCGACTCTGCCAAGCATAA
CGGCAACGGCCACTTCCACTGACCATGCTTCAGCCTTGAGTTGGCCTGTGGGCTCCTTGTACATGTGATGTATCGAAACG
ATGATCCGAGATCGTTGCAGGTCAACGATGGATTGGCAGGTCACACGAACATGGTCGAGCTTAGATAATATTCTTTCATT
GTTCATCGTTGGCTGAAGAATCCCACTGCCTGTGGGTATATATTTATCTCCTACTTTGAGTGTATTATTTTTCTTTCAGA
TTTGTTGTAGGAATGTGACATTTAGCCAACCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis