Browse Element(s) Details


Os.9565.1.S1_x_at

Description gb:AK071926.1
DB_XREF= gi:32981949
TID=Os.9565.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072F24, full insert sequence.
FL= gb:AK071926.1 gb:AK067534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1836011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18340NANA12+10583400..10583816retrotransposon protein, putative, unclassified
LOC_Os12g18350Os.27691.1.S1_x_at3/1112+10594016..10599566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18350Os.27691.2.S1_x_at2/1112+10594016..10599566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18360Os.9565.1.S1_x_at11/1112+10603772..10609330NB-ARC domain containing protein, expressed
LOC_Os12g18374Os.53373.1.S1_at11/1112+10621450..10630781NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9565.1.S1_x_at--1040--5311Chr12:10604308..10604332 (25 bp)
GAAGGGACGGTGATTGTGCCCCACA
LOC_Os12g18360
Os.9565.1.S1_x_at--1147--8691Chr12:10604294..10604318 (25 bp)
TGTGCCCCACACAATGGAGCAGTTC
LOC_Os12g18360
Os.9565.1.S1_x_at--957--2691Chr12:10604236..10604260 (25 bp)
AAGCTCGTAGTCATCCAGTTCACTA
LOC_Os12g18360
Os.9565.1.S1_x_at--734--4351Chr12:10604179..10604203 (25 bp)
CCAGCTTTCACCGAGTATGCGAAGG
LOC_Os12g18360
Os.9565.1.S1_x_at--858--10631Chr12:10604152..10604176 (25 bp)
TTCGCTGGTGCGGTTTTCATTAAGG
LOC_Os12g18360
Os.9565.1.S1_x_at--704--1131Chr12:10604069..10604093 (25 bp)
AGTGCCAACATTTTTCTTCGTCAAG
LOC_Os12g18360
Os.9565.1.S1_x_at--956--2811Chr12:10604035..10604059 (25 bp)
AAGATTGACAAGATTCCTGGTGCTA
LOC_Os12g18360
Os.9565.1.S1_x_at--775--6631Chr12:10604003..10604027 (25 bp)
GTTGCTCCGAGCCAAAATTCGAAGG
LOC_Os12g18360
Os.9565.1.S1_x_at--826--9231Chr12:10603967..10603991 (25 bp)
TCCTTACTTCCTCCGTTGATAATGA
LOC_Os12g18360
Os.9565.1.S1_x_at--568--5691Chr12:10603944..10603968 (25 bp)
GACTTCTTTTATCGTCTTTGTCTAG
LOC_Os12g18360
Os.9565.1.S1_x_at--916--7591Chr12:10603886..10603910 (25 bp)
GGGCACCTTGTTTAATGTAGCTTTC
LOC_Os12g18360
Target Sequence 
GAAGGGACGGTGATTGTGCCCCACACAATGGAGCAGTTCGCCCTCCACATGAGCCAAGCCAAGCAATCCCACAAGCTCGT
AGTCATCCAGTTCACTACTTCCCGGTGCCCTGCTTCACGCTACATCGCGCCAGCTTTCACCGAGTATGCGAAGGAGTTCG
CTGGTGCGGTTTTCATTAAGGTCAATGTCGACAGCGATGAGCTGGAGAGTGTTACGGACTGGTATGACATCGAAGGGATA
GTGCCAACATTTTTCTTCGTCAAGGATGGGGAGAAGATTGACAAGATTCCTGGTGCTAACAAGGAGTTGCTCCGAGCCAA
AATTCGAAGGCACACAGCTTCTCCTTACTTCCTCCGTTGATAATGACTTCTTTTATCGTCTTTGTCTAGTATATATATGG
CACTTATATAGTTAACTAGGAAGGGCACCTTGTTTAATGTAGCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9565.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis