Browse Element(s) Details


Os.9752.1.S1_a_at

Description gb:AK102718.1
DB_XREF= gi:32987927
TID=Os.9752.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105E18, full insert sequence.
FL= gb:AK102718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0389911/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03860Os.21635.1.S1_at10/1112+1583176..1588111major facilitator superfamily antiporter, putative, expressed
LOC_Os12g03870NANA12+1593733..1599962major facilitator superfamily antiporter, putative
LOC_Os12g03880Os.25811.1.S1_at11/1112+1600954..160343260S acidic ribosomal protein P0, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.1.S1_a_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_s_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.3.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.27782.1.S1_at1/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03920OsAffx.30809.1.S1_x_at7/1112+1621020..1625198Nodulin, putative
LOC_Os12g03920Os.53105.1.S1_at5/1112+1621020..1625198Nodulin, putative
LOC_Os12g03930NANA12+1627755..1628672retrotransposon protein, putative, unclassified
LOC_Os12g03940OsAffx.19477.1.S1_at11/1112+1629993..1630617hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_s_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_at9/1112+1634122..1641673hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9752.1.S1_a_at--767--4491Chr12:1605550..1605574 (25 bp)
GCCGTACCAGAGCAGCACGATACAA
LOC_Os12g03899
Os.9752.1.S1_a_at--742--4231Chr12:1605549..1605573 (25 bp)
CCGTACCAGAGCAGCACGATACAAA
LOC_Os12g03899
Os.9752.1.S1_a_at--593--6971Chr12:1605547..1605571 (25 bp)
GTACCAGAGCAGCACGATACAAATT
LOC_Os12g03899
Os.9752.1.S1_a_at--14--1711Chr12:1605545..1605569 (25 bp)
ACCAGAGCAGCACGATACAAATTAG
LOC_Os12g03899
Os.9752.1.S1_a_at--802--1171Chr12:1605381..1605405 (25 bp)
AGTACTACTCTGTCCCAAAGAATCA
LOC_Os12g03899
Os.9752.1.S1_a_at--531--7011Chr12:1605380..1605404 (25 bp)
GTACTACTCTGTCCCAAAGAATCAA
LOC_Os12g03899
Os.9752.1.S1_a_at--333--1991Chr12:1605375..1605399 (25 bp)
ACTCTGTCCCAAAGAATCAAAGCTA
LOC_Os12g03899
Os.9752.1.S1_a_at--615--9471Chr12:1605373..1605397 (25 bp)
TCTGTCCCAAAGAATCAAAGCTAGG
LOC_Os12g03899
Os.9752.1.S1_a_at--198--9151Chr12:1605369..1605393 (25 bp)
TCCCAAAGAATCAAAGCTAGGGTTT
LOC_Os12g03899
Os.9752.1.S1_a_at--356--1551Chr12:1605209..1605233 (25 bp)
AGCATTCTACCAGTATAATGAATAT
LOC_Os12g03899
Os.9752.1.S1_a_at--543--271Chr12:1605186..1605210 (25 bp)
ATAGTACTATGTACATTGTAACTAG
LOC_Os12g03899
Target Sequence 
GCCGTACCAGAGCAGCACGATACAAATTAGACTGTTCAGGTATACTACAGATCTAGATTCTTCAGAACTTCAGATGTTGG
CAATTTCATGAGCCCTGCANCCCGCTGTGTGAAGCAAAGGTATAACATATGCTCATCTGGATCCCCCAGGAGCAATAGAT
AGAAGCGAGAGTACTACTCTGTCCCAAAGAATCAAAGCTAGGGTTTGATTATTTTTGGGACGGANGGGNTAGGTGCCAGA
TATGCAATTGCAGCATTTCAGCGAAAGGAATATATATAGTTGGGGTAAATGGTGGCCACTGATGGCTAGGTTTTTCATGG
CCAGCCAGCATGTATACCGAGTAGCATTCTACCAGTATAATGAATATAGTACTATGTACATTGTAACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9752.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis