Browse Element(s) Details


Os.9752.2.S1_x_at

Description gb:AK100888.1
DB_XREF= gi:32986097
TID=Os.9752.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023128K07, full insert sequence.
FL= gb:AK100888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0389911/11transporter, putative, expressed
LOC_Os11g041047/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03860Os.21635.1.S1_at10/1112+1583176..1588111major facilitator superfamily antiporter, putative, expressed
LOC_Os12g03870NANA12+1593733..1599962major facilitator superfamily antiporter, putative
LOC_Os12g03880Os.25811.1.S1_at11/1112+1600954..160343260S acidic ribosomal protein P0, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.1.S1_a_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_s_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.3.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.27782.1.S1_at1/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03920OsAffx.30809.1.S1_x_at7/1112+1621020..1625198Nodulin, putative
LOC_Os12g03920Os.53105.1.S1_at5/1112+1621020..1625198Nodulin, putative
LOC_Os12g03930NANA12+1627755..1628672retrotransposon protein, putative, unclassified
LOC_Os12g03940OsAffx.19477.1.S1_at11/1112+1629993..1630617hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_s_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_at9/1112+1634122..1641673hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9752.2.S1_x_at--250--7752Chr12:1606501..1606522 (22 bp)
GGTGTTACCATCATTACAGGCTGTT
LOC_Os12g03899
Os.9752.2.S1_x_at--426--9772Chr12:1606381..1606487 (25 bp)
TAATGCTGTGCCTCAAGACCAACGA
LOC_Os12g03899
Os.9752.2.S1_x_at--492--10372Chr12:1606320..1606344 (25 bp)
TTTTTTAAGGCAGTGGCTCCAGCAG
LOC_Os12g03899
Os.9752.2.S1_x_at--780--10672Chr12:1605638..1605813 (25 bp)
TTCCTTCCTTCCAGGTGATCAGATG
LOC_Os12g03899
Os.9752.2.S1_x_at--926--6252Chr12:1605617..1605641 (25 bp)
GATGGTGTTCTTTCTTTTGAATCTC
LOC_Os12g03899
Os.9752.2.S1_x_at--21--3072Chr12:1605598..1605622 (25 bp)
AATCTCTTCGAGTTGCTTGGACTTA
LOC_Os12g03899
Os.9752.2.S1_x_at--819--4932Chr12:1605584..1605608 (25 bp)
GCTTGGACTTATCCTCACTTTCAAA
LOC_Os12g03899
Os.9752.2.S1_x_at--253--8471Chr12:1605552..1605576 (25 bp)
TGGCCGTACCAGAGCAGCACGATAC
LOC_Os12g03899
Os.9752.2.S1_x_at--744--1231Chr12:1605383..1605407 (25 bp)
AGAGTACTACTCTGTCCCAAAGAAT
LOC_Os12g03899
Os.9752.2.S1_x_at--346--8451Chr12:1605258..1605282 (25 bp)
GGCCACTGATGGCTAGGTTTTTCAT
LOC_Os12g03899
Os.9752.2.S1_x_at--461--4411Chr12:1605232..1605256 (25 bp)
GCCAGCCAGCATGTATACCGAGTAG
LOC_Os12g03899
Target Sequence 
GGTGTTACCATCATTACAGGCTGTTTCATCCTACAAAATAATGCTGTGCCTCAAGACCAACGAGGGGCTGCTAATGGCTT
GGCAATGACAGGAATGTCCTTTTTTAAGGCAGTGGCTCCAGCAGGGGCGGGCATTGTGTTCTCGTGGGCACAAAAACGCC
AGCATGCTTCCTTCCTTCCAGGTGATCAGATGGTGTTCTTTCTTTTGAATCTCTTCGAGTTGCTTGGACTTATCCTCACT
TTCAAACCCTTTCTGGCCGTACCAGAGCAGCACGATACAAATTAGACTGTTCAGGAGCAATAGATAGGAGCGAGAGTACT
ACTCTGTCCCAAAGAATCAAAGCTAGGGTTTGATTATTTTTGGGACGGAGGGGTAGGTGCCAGATATGCAATTGCAGCAT
TTCAGCGAAAGGAATATATATAGTTGGGGTAAATGGTGGCCACTGATGGCTAGGTTTTTCATGGCCAGCCAGCATGTATA
CCGAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9752.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis