Browse Element(s) Details


Os.9752.3.S1_x_at

Description gb:AK064297.1
DB_XREF= gi:32974315
TID=Os.9752.3
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A04, full insert sequence.
FL= gb:AK064297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0389911/11transporter, putative, expressed
LOC_Os11g041046/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03860Os.21635.1.S1_at10/1112+1583176..1588111major facilitator superfamily antiporter, putative, expressed
LOC_Os12g03870NANA12+1593733..1599962major facilitator superfamily antiporter, putative
LOC_Os12g03880Os.25811.1.S1_at11/1112+1600954..160343260S acidic ribosomal protein P0, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.1.S1_a_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_s_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.3.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.27782.1.S1_at1/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03920OsAffx.30809.1.S1_x_at7/1112+1621020..1625198Nodulin, putative
LOC_Os12g03920Os.53105.1.S1_at5/1112+1621020..1625198Nodulin, putative
LOC_Os12g03930NANA12+1627755..1628672retrotransposon protein, putative, unclassified
LOC_Os12g03940OsAffx.19477.1.S1_at11/1112+1629993..1630617hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_s_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_at9/1112+1634122..1641673hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9752.3.S1_x_at--781--10672Chr12:1605638..1605813 (25 bp)
TTCCTTCCTTCCAGGTGATCAGATG
LOC_Os12g03899
Os.9752.3.S1_x_at--925--6252Chr12:1605617..1605641 (25 bp)
GATGGTGTTCTTTCTTTTGAATCTC
LOC_Os12g03899
Os.9752.3.S1_x_at--489--5252Chr12:1605599..1605623 (25 bp)
GAATCTCTTCGAGTTGCTTGGACTT
LOC_Os12g03899
Os.9752.3.S1_x_at--213--6052Chr12:1605589..1605613 (25 bp)
GAGTTGCTTGGACTTATCCTCACTT
LOC_Os12g03899
Os.9752.3.S1_x_at--595--8411Chr12:1605551..1605575 (25 bp)
GGCCGTACCAGAGCAGCACGATACA
LOC_Os12g03899
Os.9752.3.S1_x_at--1045--6612Chr12:1605475..1605499 (25 bp)
GTTGGCAATTTCATGAGCCCTGCAG
LOC_Os12g03899
Os.9752.3.S1_x_at--1027--3831Chr12:1605456..1605480 (25 bp)
CTGCAGCCCGCTGTGTGAAGCAAAG
LOC_Os12g03899
Os.9752.3.S1_x_at--803--1171Chr12:1605381..1605405 (25 bp)
AGTACTACTCTGTCCCAAAGAATCA
LOC_Os12g03899
Os.9752.3.S1_x_at--125--872Chr12:1605250..1605274 (25 bp)
ATGGCTAGGTTTTTCATGGCCAGCC
LOC_Os12g03899
Os.9752.3.S1_x_at--456--7071Chr12:1605221..1605242 (22 bp)
GTAATACCGAGTAGCATTCTACCAG
LOC_Os12g03899
Os.9752.3.S1_x_at--990--8191Chr12:1605117..1605141 (25 bp)
GGAATCGAGATCAGTACATTGCTAA
LOC_Os12g03899
Target Sequence 
TTCCTTCCTTCCAGGTGATCAGATGGTGTTCTTTCTTTTGAATCTCTTCGAGTTGCTTGGACTTATCCTCACTTNCAAAC
CCTTTCTGGCCGTACCAGAGCAGCACGATACAAATTAGACTGTTCAGGTATACTACAGATCTAGATTCTTCAGAACTTCA
GATGTTGGCAATTTCATGAGCCCTGCAGCCCGCTGTGTGAAGCAAAGGCATATAACATGATGCTCATCTGGATCCCCCAG
GAGCAATAGATAGAAGCGAGNAGTACTACTCTGTCCCAAAGAATCAAAGCTAGGGTTTTGATTATTTTTGNGACGGATGG
GGTAGGTGCCAGATATGCAATTGCAGCATTTCANCGAAAGGAATATATATAGTTGGGGGTAAATGGTGGCCACNNTGATG
GCTAGGTTTTTCATGGCCAGCCAGCATGTAATACCGAGTAGCATTCTACCAGTATAATGAATATAGTACTATGTACATTG
TAACTAGTAAAACNCTGTAAGTGACATCAGCTTGAGAATGAAATTATTGCTGGAATCGAGATCAGTACATTGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9752.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis