Browse Element(s) Details


Os.9774.1.S1_at

Description gb:AK106093.1
DB_XREF= gi:32991302
TID=Os.9774.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B10, full insert sequence.
FL= gb:AK106093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3216011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32140NANA11+18464466..18469378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32150Os.47463.1.S1_x_at5/1111+18470805..18475642transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32150Os.14491.2.S1_x_at4/1111+18470805..18475642transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32160Os.9774.1.S1_at11/1111+18480389..18486410expressed protein
LOC_Os11g32170OsAffx.31261.1.S1_at11/1111+18489386..18497775NB-ARC domain containing protein, expressed
LOC_Os11g32180OsAffx.31892.2.S1_x_at2/1111+18500232..18507086retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9774.1.S1_at--936--3231Chr11:18483959..18483983 (25 bp)
CAAGAATTTCTGTGACCGTCCAAAG
LOC_Os11g32160
Os.9774.1.S1_at--1114--951Chr11:18483982..18484006 (25 bp)
AGGATCAGAGGCCACAACCAGAAGA
LOC_Os11g32160
Os.9774.1.S1_at--695--811Chr11:18485968..18485992 (25 bp)
ATGGTGAGGTGCATATCTGGGACAA
LOC_Os11g32160
Os.9774.1.S1_at--570--2331Chr11:18486127..18486151 (25 bp)
AAAGCTGGCCCTTACGAGTTCAAGC
LOC_Os11g32160
Os.9774.1.S1_at--122--5211Chr11:18486165..18486189 (25 bp)
GAATTACGACGACATGTTCTCGCCG
LOC_Os11g32160
Os.9774.1.S1_at--994--1831Chr11:18486173..18486197 (25 bp)
ACGACATGTTCTCGCCGTTGAATTT
LOC_Os11g32160
Os.9774.1.S1_at--617--3131Chr11:18486193..18486217 (25 bp)
AATTTTTCTGCTCCATTGACGCTGG
LOC_Os11g32160
Os.9774.1.S1_at--37--8911Chr11:18486228..18486252 (25 bp)
TGAGAGCTCGTTCGCAATCGATGAT
LOC_Os11g32160
Os.9774.1.S1_at--395--2091Chr11:18486272..18486296 (25 bp)
ACATACAGTTCATGTACCTCTCTCT
LOC_Os11g32160
Os.9774.1.S1_at--480--4431Chr11:18486335..18486359 (25 bp)
GCCTTCGTTTAGTATATAGCCCCGT
LOC_Os11g32160
Os.9774.1.S1_at--1022--271Chr11:18486350..18486374 (25 bp)
ATAGCCCCGTGTACTGAATTTTGTT
LOC_Os11g32160
Target Sequence 
CAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTA
CCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGC
TGGAGCGGTGCGACATATTGTACATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGACAAGGGTTTTGA
CGATGATGGGAATCAGGTTTGGGGAACCAAAGCTGGCCCTTACGAGTTCAAGCCTGCCCCCAAGTCGAATTACGACGACA
TGTTCTCGCCGTTGAATTTTTCTGCTCCATTGACGCTGGAGAAGAAGATTGAGAGCTCGTTCGCAATCGATGATCAGTAG
TATATTAGTATGTACATACAGTTCATGTACCTCTCTCTCTTTTTTTTTAATTTAAGAAAACTAAGCAGAAAAAACTGCCT
TCGTTTAGTATATAGCCCCGTGTACTGAATTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis