Browse Element(s) Details


Os.9805.1.S1_at

Description gb:AK103636.1
DB_XREF= gi:32988845
TID=Os.9805.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033134F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033134F01, full insert sequence.
FL= gb:AK103636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1841011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18374Os.53373.1.S1_at11/1112+10621450..10630781NB-ARC domain containing protein, expressed
LOC_Os12g18390OsAffx.2719.1.S1_at2/1112+10637376..10638485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18400OsAffx.30517.2.A1_at4/1112+10641530..10647056retrotransposon protein, putative, unclassified
LOC_Os12g18400OsAffx.448.1.S1_x_at1/1112+10641530..10647056retrotransposon protein, putative, unclassified
LOC_Os12g18410Os.9805.1.S1_at11/1112+10649374..10650768expressed protein
LOC_Os12g18420Os.46003.1.A1_x_at1/1112+10654737..10657484Transposable element protein, putative, Retrotrans_gag
LOC_Os12g18420Os.46003.1.A1_at1/1112+10654737..10657484Transposable element protein, putative, Retrotrans_gag
LOC_Os12g18430NANA12+10658207..10659919hypothetical protein
LOC_Os12g18440NANA12+10662049..10662468hypothetical protein
LOC_Os12g18450Os.49862.1.S1_at11/1112+10666871..10669379expressed protein
LOC_Os12g18460NANA12+10672302..10679050retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9805.1.S1_at--795--10191Chr12:10650212..10650236 (25 bp)
TATATATCGCTCACAGCTTCGCTGA
LOC_Os12g18410
Os.9805.1.S1_at--1150--8952Chr12:10650234..10650258 (25 bp)
TGACAACATCGATCTGCATCTCATG
LOC_Os12g18410
Os.9805.1.S1_at--52--9111Chr12:10650278..10650302 (25 bp)
TGCTGCCATAGCACCAAGGAGGTTT
LOC_Os12g18410
Os.9805.1.S1_at--722--3191Chr12:10650292..10650316 (25 bp)
CAAGGAGGTTTCTGCGACCGCATTT
LOC_Os12g18410
Os.9805.1.S1_at--470--1231Chr12:10650369..10650393 (25 bp)
AGTTGGGTCACGTCCCAGGATCGGA
LOC_Os12g18410
Os.9805.1.S1_at--834--5731Chr12:10650429..10650453 (25 bp)
GACGTCGAGGTCTCCAACAGTACGG
LOC_Os12g18410
Os.9805.1.S1_at--824--2471Chr12:10650444..10650468 (25 bp)
AACAGTACGGTATTGCTCCAATGAG
LOC_Os12g18410
Os.9805.1.S1_at--1042--71Chr12:10650495..10650519 (25 bp)
ATTGCCGCGAGGATGGTGCTTCTCT
LOC_Os12g18410
Os.9805.1.S1_at--514--4911Chr12:10650512..10650536 (25 bp)
GCTTCTCTTTGTGTTGACTGTTGAC
LOC_Os12g18410
Os.9805.1.S1_at--890--6651Chr12:10650531..10650555 (25 bp)
GTTGACAACGACTAGCCATCGGATT
LOC_Os12g18410
Os.9805.1.S1_at--694--8011Chr12:10650564..10650588 (25 bp)
GGAGGTAGTCTTTAGCATTTTCAAA
LOC_Os12g18410
Target Sequence 
TATATATCGCTCACAGCTTCGCTGACAACATCGATCTGCATCTCATGNATGAGTGGATGTGTGCCATGCTGCCATAGCAC
CAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCNNNNNNNNNNNNNNNNNNNCAGAA
CAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACG
TCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTG
CTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis