Browse Element(s) Details


Os.9843.1.S1_at

Description gb:AK070811.1
DB_XREF= gi:32980834
TID=Os.9843.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative sphingosine kinase (OSJNBa0076F20.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073O10, full insert sequence.
FL= gb:AK121309.1 gb:AK070811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3728011/11sphingosine kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37260Os.46642.1.S1_at11/1110+19625204..19627699fringe protein, putative, expressed
LOC_Os10g37270OsAffx.18553.1.S1_at8/1110+19632000..19632413hypothetical protein
LOC_Os10g37280Os.9843.1.S1_at11/1110+19633110..19641747sphingosine kinase, putative, expressed
LOC_Os10g37290Os.17522.1.S1_s_at11/1110+19642147..19642977expressed protein
LOC_Os10g37320OsAffx.7967.1.S1_at6/1110+19664699..19665102NA

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0030148biological_processsphingolipid biosynthesis
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0017050molecular_functionD-erythro-sphingosine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9843.1.S1_at--44--3051Chr10:19641173..19641197 (25 bp)
AATCTCGAATCGGTGTACTTGCATT
LOC_Os10g37280
Os.9843.1.S1_at--325--3871Chr10:19641276..19641300 (25 bp)
CTGATGCCGGCCACTTGATGTTCAT
LOC_Os10g37280
Os.9843.1.S1_at--868--1491Chr10:19641319..19641343 (25 bp)
AGCACCCCGAATGTGATGTCCTTGA
LOC_Os10g37280
Os.9843.1.S1_at--506--771Chr10:19641334..19641358 (25 bp)
ATGTCCTTGATCAGCTTGAGCCTTG
LOC_Os10g37280
Os.9843.1.S1_at--709--351Chr10:19641378..19641402 (25 bp)
ATAAGACTTGTGTCCTGCGGTGTTT
LOC_Os10g37280
Os.9843.1.S1_at--917--4671Chr10:19641394..19641418 (25 bp)
GCGGTGTTTGTGTTCTCAGTACAGT
LOC_Os10g37280
Os.9843.1.S1_at--169--1131Chr10:19641459..19641483 (25 bp)
AGTGCAGAACTGCTCATGTACCTTT
LOC_Os10g37280
Os.9843.1.S1_at--619--3791Chr10:19641491..19641515 (25 bp)
CTCCCTTGTAACTTGTTCTTCGTGA
LOC_Os10g37280
Os.9843.1.S1_at--820--7411Chr10:19641546..19641570 (25 bp)
GTGTTGTCTGCCACATGAGCTAGAT
LOC_Os10g37280
Os.9843.1.S1_at--548--7591Chr10:19641650..19641674 (25 bp)
GGGCTTTCTTTACTTGCCTGTTATA
LOC_Os10g37280
Os.9843.1.S1_at--102--6951Chr10:19641699..19641723 (25 bp)
GTAGTAGTACTACTCTCCGTTTCAC
LOC_Os10g37280
Target Sequence 
AATCTCGAATCGGTGTACTTGCATTCGAAACAACACAGTGGCTGCCACCCCCAGTGTGCGCGGTTGTTTGGAGGTCCCTG
TTTGTGTGGTTGTTTTGAGGTCCCTGATGCCGGCCACTTGATGTTCATCGCCCCCATTAAAGGGACAGCACCCCGAATGT
GATGTCCTTGATCAGCTTGAGCCTTGTAGTGTTTACAAAGTGTGAATAAGACTTGTGTCCTGCGGTGTTTGTGTTCTCAG
TACAGTATAGGATTTTTCAACAGGAAAAAAAAGATGGACAATCTGTAGTGCAGAACTGCTCATGTACCTTTCTATCCCCT
CCCTTGTAACTTGTTCTTCGTGAATTGTGGTGATGTATGAGTTGTATTTGTACGTGTTGTCTGCCACATGAGCTAGATGA
TGATGATCATCTTGTGAAGATAGAGTTACTGATGTGTATTGTTGTCGTTTGGAGGATAAGCAATTTGGTGGTTGGGTGGG
CTTTCTTTACTTGCCTGTTATATTCTCACAGGAATGCGCACATCTTGTAGTAGTACTACTCTCCGTTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis