Browse Element(s) Details


Os.9971.1.S1_s_at

Description gb:BX898176
DB_XREF= gi:40486861
DB_XREF=BX898176
CLONE=p750b04p3
TID=Os.9971.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9971 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4285011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42810Os.10767.1.S1_at11/112+25728592..25730790oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g42810OsAffx.12462.1.S1_s_at11/112+25728592..25730790oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g42810Os.10767.2.S1_x_at10/112+25728592..25730790oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g42820OsAffx.12463.1.S1_at11/112+25733814..25735183LIM domain containing protein, expressed
LOC_Os02g42830NANA2+25740246..25740824retrotransposon protein, putative, unclassified
LOC_Os02g42840NANA2+25741057..25741821retrotransposon protein, putative, LINE subclass
LOC_Os02g42850Os.9971.1.S1_s_at11/112+25753984..25757154Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g42860Os.14249.1.S1_a_at11/112+25761430..25768571ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os02g42870Os.55708.1.A1_at11/112+25772210..25774926Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9971.1.S1_s_at--346--951Chr02:25756558..25756582 (25 bp)
AGGACGGATCGGTTCATCAGGCCGA
LOC_Os02g42850
Os.9971.1.S1_s_at--757--8531Chr02:25756600..25756624 (25 bp)
TGGACGATTCTTCCCTGCAGCAGCA
LOC_Os02g42850
Os.9971.1.S1_s_at--70--8631Chr02:25756659..25756683 (25 bp)
TGGGATTTTCAGGAGCAGTTCGACA
LOC_Os02g42850
Os.9971.1.S1_s_at--869--5931Chr02:25756671..25756695 (25 bp)
GAGCAGTTCGACAGCATCGACCAGA
LOC_Os02g42850
Os.9971.1.S1_s_at--233--4231Chr02:25756762..25756786 (25 bp)
CCGAGCTGGAACGTACCGCGTGATG
LOC_Os02g42850
Os.9971.1.S1_s_at--500--5751Chr02:25756794..25756818 (25 bp)
GACGTGCTCAAGGATCGATTTTTAA
LOC_Os02g42850
Os.9971.1.S1_s_at--978--6751Chr02:25756828..25756852 (25 bp)
GTTAATTCATAGATGTCCCGTGGAA
LOC_Os02g42850
Os.9971.1.S1_s_at--579--8271Chr02:25756951..25756975 (25 bp)
GGCATGATAAGTCACTTCTGTACGA
LOC_Os02g42850
Os.9971.1.S1_s_at--729--1811Chr02:25756972..25756996 (25 bp)
ACGAATTTATGTTTGCCACTTTGCT
LOC_Os02g42850
Os.9971.1.S1_s_at--104--4891Chr02:25756994..25757018 (25 bp)
GCTTTGGAGAGCATGGGCACCGACA
LOC_Os02g42850
Os.9971.1.S1_s_at--877--5551Chr02:25757039..25757063 (25 bp)
GAAAGCTGTAGAGAATTGCGCCTAT
LOC_Os02g42850
Target Sequence 
AGGACGGATCGGTTCATCAGGCCGATGGGCCATCGTGCGGNGTGGACGATTCTTCCCTGCAGCAGCAGCAGCAGGAGGGG
TTCGGTGGCAACGGCGGCTGCTGGGATTTTCAGGAGCAGTTCGACAGCATCGACCAGATGCAGGCGAGCGGCGGCGGCGG
CGGCTTCTGCGACCTGCTCTCCATGAGCGACTTCGACCTCTGGGCCGAGCTGGAACGTACCGCGTGATGGGGGAACGACG
TGCTCAAGGATCGATTTTTAATTAGAGCTTNGTTAATTCATAGATGTCCCGTGGAAATCAAATTAAGGGGTGTTTGTAAT
ACTACTGCATTGTAAATTATCGCGGTGTATTTATAGAGCTGTTTAAATTAGCAACATATATAAGGAAGATCAGAGGCATG
ATAAGTCACTTCTGTACGAATTTATGTTTGCCACTTTGCTTTGGAGAGCATGGGCACCGACAGAAAGATGGAAAGGAAGA
AGGAAAGCTGTAGAGAATTGCGCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9971.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis