Browse Element(s) Details


OsAffx.10221.1.S1_at

Description gb:NM_186553.1
DB_XREF= gi:34900191
TID=OsAffx.10221.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OJ1779_B07.41), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1167010/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11640Os.8606.1.S1_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11640OsAffx.22947.1.S1_x_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11650Os.8005.2.S1_x_at11/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.8005.3.S1_x_at10/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.6445.1.S1_x_at1/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11659OsAffx.10222.1.S1_x_at9/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_x_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.10222.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11670OsAffx.10221.1.S1_at10/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11670OsAffx.12243.1.S1_at4/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11670OsAffx.20517.2.S1_x_at1/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11680NANA7+6457520..6464955retrotransposon protein, putative, unclassified
LOC_Os07g11690NANA7+6466546..6467030hypothetical protein
LOC_Os07g11700NANA7+6468848..6470320hypothetical protein
LOC_Os07g11710NANA7+6477530..6478006hypothetical protein
LOC_Os07g11720NANA7+6479493..6480481Transposable element protein, putative, Retrotrans_gag

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10221.1.S1_at--1099--7671Chr07:6450084..6450108 (25 bp)
GGGTTATCCGCACACAAAGGAGTAG
NONE
OsAffx.10221.1.S1_at--1116--2791Chr07:6450196..6450220 (25 bp)
AAGATGAGGCTTTCTTTAGCGGAAG
LOC_Os07g11670
OsAffx.10221.1.S1_at--1118--10431Chr07:6450211..6450235 (25 bp)
TTAGCGGAAGCCTTGAGGTCGGCCA
LOC_Os07g11670
OsAffx.10221.1.S1_at--620--4371Chr07:6450232..6450256 (25 bp)
GCCAGATGGGTTTTCAGCCCGGGTA
LOC_Os07g11670
OsAffx.10221.1.S1_at--854--8291Chr07:6450303..6450327 (25 bp)
GGCTTTAGACCGAGAGGACCGCGAA
LOC_Os07g11670
OsAffx.10221.1.S1_at--863--5811Chr07:6450319..6450343 (25 bp)
GACCGCGAAGCTTCGGGTCGCAATG
LOC_Os07g11670
OsAffx.10221.1.S1_at--554--7591Chr07:6450386..6450410 (25 bp)
GGGCATCCAAAGACCGTGGCAGCAG
LOC_Os07g11670
OsAffx.10221.1.S1_at--715--7531Chr07:6450401..6450425 (25 bp)
GTGGCAGCAGCGTCCTGCAAACCGA
LOC_Os07g11670
OsAffx.10221.1.S1_at--1050--1351Chr07:6450473..6450497 (25 bp)
AGAGAAAGCAACAACCATCCGGAAA
LOC_Os07g11670
OsAffx.10221.1.S1_at--758--4071Chr07:6450517..6450541 (25 bp)
CGAGTTCGATTGGAGGCAGCAAGCA
LOC_Os07g11670
OsAffx.10221.1.S1_at--508--2931Chr07:6450598..6450622 (25 bp)
AAGGAATTGTTCTCGGGCTGGAAGA
LOC_Os07g11670
Target Sequence 
GGGTTATCCGCACACAAAGGAGTAGGAGAAGAGGAGGGAGGCATGGCGTGGAGGAATGATCGCAGCAGGCAAGGTGGAGG
GGGTACTAGCAGGGAGGAGGTGTTTCGCGATGAAGATGAGGCTTTCTTTAGCGGAAGCCTTGAGGTCGGCCAGATGGGTT
TTCAGCCCGGGTATGGCTACGGTCAGCAAGGAGGCCATAGGAGGGAGTGGCAGCGGAGCGGCTTTAGACCGAGAGGACCG
CGAAGCTTCGGGTCGCAATGGGGCGGCTATGCAGGGCGGCCGGGTAGAGAGGGACCAGCCTGGGGCATCCAAAGACCGTG
GCAGCAGCGTCCTGCAAACCGACCGATGCAAGAAGGTAATGAGGGAAGGTGGCAGCAGGGGATTTCCAAAGAGAAAGCAA
CAACCATCCGGAAAGCAAAGGAGGCAATGGGGGCGAGTTCGATTGGAGGCAGCAAGCAAGTAAAGATAGGAGATAGGGAG
GTGTTGGCTGATCAAGTAGAGAAGAAGGAGCTCGAAGGAATTGTTCTCGGGCTGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis