Browse Element(s) Details


OsAffx.10222.1.S1_at

Description gb:NM_186548.1
DB_XREF= gi:34900181
GEN=OJ1779_B07.35
TID=OsAffx.10222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) contains EST AU174230(S1919)~unknown protein (OJ1779_B07.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g116598/11
LOC_Os11g043001/11phosphoglycerate mutase family protein, expressed
LOC_Os02g292801/11retrotransposon protein, putative, unclassified
LOC_Os03g412101/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11620OsAffx.28403.1.S1_at11/117+6411376..6412380hypothetical protein
LOC_Os07g11630Os.6445.1.S1_x_at11/117+6414328..6415011Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11640Os.8606.1.S1_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11640OsAffx.22947.1.S1_x_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11650Os.8005.2.S1_x_at11/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.8005.3.S1_x_at10/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.6445.1.S1_x_at1/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11659OsAffx.10222.1.S1_x_at9/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_x_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.10222.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11670OsAffx.10221.1.S1_at10/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11670OsAffx.12243.1.S1_at4/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11670OsAffx.20517.2.S1_x_at1/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11680NANA7+6457520..6464955retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10222.1.S1_at--998--4331Chr07:6437387..6437406 (20 bp)
CCATGTCTATGTCGGTCAGGAGAGT
LOC_Os07g11659
OsAffx.10222.1.S1_at--844--731NONE
ATGTCTATGTCGGTCAGGAGAGTGC
NONE
OsAffx.10222.1.S1_at--537--8731NONE
TGTCTATGTCGGTCAGGAGAGTGCT
NONE
OsAffx.10222.1.S1_at--335--9551NONE
TCTATGTCGGTCAGGAGAGTGCTTG
NONE
OsAffx.10222.1.S1_at--677--9631Chr07:6438172..6438192 (21 bp)
TCAGGAGAGTGCTTGGTCTCGGAAT
LOC_Os07g11659
OsAffx.10222.1.S1_at--314--107914Chr12:17428766..17428798 (25 bp)
TTGTTTGTTTCATGTGTAGATGTCT
NONE
OsAffx.10222.1.S1_at--100--6873Chr07:6438204..6438228 (25 bp)
GTTTGTTTCATGTGTAGATGTCTTG
LOC_Os07g11659
OsAffx.10222.1.S1_at--843--10312Chr07:6438209..6438233 (25 bp)
TTTCATGTGTAGATGTCTTGATGGC
LOC_Os07g11659
OsAffx.10222.1.S1_at--396--9631Chr07:6438211..6438235 (25 bp)
TCATGTGTAGATGTCTTGATGGCTT
LOC_Os07g11659
OsAffx.10222.1.S1_at--545--3511Chr07:6438212..6438236 (25 bp)
CATGTGTAGATGTCTTGATGGCTTG
LOC_Os07g11659
OsAffx.10222.1.S1_at--639--7431Chr07:6438215..6438239 (25 bp)
GTGTAGATGTCTTGATGGCTTGGGA
LOC_Os07g11659
Target Sequence 
CCATGTCTATGTCGGTCAGGAGAGTGCTTGGTCTCGGAATATGGTTTCTTTGTTTGTTTCATGTGTAGATGTCTTGATGG
CTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis