Browse Element(s) Details


OsAffx.10222.1.S1_x_at

Description gb:NM_186548.1
DB_XREF= gi:34900181
GEN=OJ1779_B07.35
TID=OsAffx.10222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) contains EST AU174230(S1919)~unknown protein (OJ1779_B07.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g116599/11
LOC_Os04g051042/11hypothetical protein
LOC_Os12g138802/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g302802/11hypothetical protein
LOC_Os12g174302/11NB-ARC domain containing protein, expressed
LOC_Os11g308902/11Sulfotransferase domain containing protein
LOC_Os02g142702/11hypothetical protein
LOC_Os07g122702/11hypothetical protein
LOC_Os01g272702/11Zinc knuckle family protein
LOC_Os10g229402/11hypothetical protein
LOC_Os07g094102/11hypothetical protein
LOC_Os07g272902/11hypothetical protein
LOC_Os03g435502/11hypothetical protein
LOC_Os07g161902/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g144002/11retrotransposon protein, putative, unclassified, expressed
LOC_Os02g402502/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g412102/11Zinc knuckle family protein
LOC_Os05g187202/11Zinc knuckle family protein
LOC_Os04g108802/11hypothetical protein
LOC_Os05g324702/11hypothetical protein
LOC_Os07g124202/11hypothetical protein
LOC_Os10g187502/11hypothetical protein
LOC_Os12g261002/11hypothetical protein
LOC_Os01g388702/11hypothetical protein
LOC_Os03g410102/11hypothetical protein
LOC_Os05g401002/11hypothetical protein
LOC_Os08g274102/11Zinc knuckle family protein
LOC_Os12g162002/11glutathione synthetase, putative, expressed
LOC_Os12g151402/11Zinc knuckle family protein
LOC_Os09g214102/11BED zinc finger family protein
LOC_Os03g191041/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g288821/11hypothetical protein
LOC_Os04g288001/11hypothetical protein
LOC_Os01g400101/11retrotransposon protein, putative, unclassified
LOC_Os02g292801/11retrotransposon protein, putative, unclassified
LOC_Os10g058701/11hypothetical protein
LOC_Os04g346401/11hypothetical protein
LOC_Os04g233401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g023201/11hypothetical protein
LOC_Os11g043001/11phosphoglycerate mutase family protein, expressed
LOC_Os05g429901/11retrotransposon protein, putative, unclassified
LOC_Os01g248001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g062801/11hypothetical protein
LOC_Os07g280501/11O-methyltransferase family protein
LOC_Os08g305501/11hypothetical protein
LOC_Os01g423101/11hypothetical protein
LOC_Os08g059201/11retrotransposon protein, putative, unclassified
LOC_Os11g300001/11retrotransposon protein, putative, unclassified
LOC_Os10g137101/11hypothetical protein
LOC_Os04g185801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g180641/11expressed protein
LOC_Os03g388501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11620OsAffx.28403.1.S1_at11/117+6411376..6412380hypothetical protein
LOC_Os07g11630Os.6445.1.S1_x_at11/117+6414328..6415011Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11640Os.8606.1.S1_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11640OsAffx.22947.1.S1_x_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11650Os.8005.2.S1_x_at11/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.8005.3.S1_x_at10/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.6445.1.S1_x_at1/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11659OsAffx.10222.1.S1_x_at9/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_x_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.10222.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11670OsAffx.10221.1.S1_at10/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11670OsAffx.12243.1.S1_at4/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11670OsAffx.20517.2.S1_x_at1/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11680NANA7+6457520..6464955retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006750biological_processglutathione biosynthesis
GO:0006857biological_processoligopeptide transport
GO:0006952biological_processdefense response
GO:0008152biological_processmetabolism
GO:0009626biological_processhypersensitive response
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009809biological_processlignin biosynthesis
GO:0015833biological_processpeptide transport
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0003824molecular_functioncatalytic activity
GO:0004363molecular_functionglutathione synthase activity
GO:0005215molecular_functiontransporter activity
GO:0005515molecular_functionprotein binding
GO:0008146molecular_functionsulfotransferase activity
GO:0008171molecular_functionO-methyltransferase activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10222.1.S1_x_at--454--5951Chr07:6437376..6437400 (25 bp)
GAGCACATCAACCATGTCTATGTCG
LOC_Os07g11659
OsAffx.10222.1.S1_x_at--318--371Chr07:6437382..6437406 (25 bp)
ATCAACCATGTCTATGTCGGTCAGG
LOC_Os07g11659
OsAffx.10222.1.S1_x_at--997--4331Chr07:6437387..6437406 (20 bp)
CCATGTCTATGTCGGTCAGGAGAGT
LOC_Os07g11659
OsAffx.10222.1.S1_x_at--538--8731NONE
TGTCTATGTCGGTCAGGAGAGTGCT
NONE
OsAffx.10222.1.S1_x_at--336--9551NONE
TCTATGTCGGTCAGGAGAGTGCTTG
NONE
OsAffx.10222.1.S1_x_at--676--9631Chr07:6438172..6438192 (21 bp)
TCAGGAGAGTGCTTGGTCTCGGAAT
LOC_Os07g11659
OsAffx.10222.1.S1_x_at--243--781312Chr12:2552305..2552329 (25 bp)
GGTCTCGGAATATGGTTTCTTTGTT
NONE
OsAffx.10222.1.S1_x_at--320--945209Chr12:3158092..3158116 (25 bp)
TCGGAATATGGTTTCTTTGTTTGTT
NONE
OsAffx.10222.1.S1_x_at--99--6873Chr07:6438204..6438228 (25 bp)
GTTTGTTTCATGTGTAGATGTCTTG
LOC_Os07g11659
OsAffx.10222.1.S1_x_at--395--9631Chr07:6438211..6438235 (25 bp)
TCATGTGTAGATGTCTTGATGGCTT
LOC_Os07g11659
OsAffx.10222.1.S1_x_at--640--7431Chr07:6438215..6438239 (25 bp)
GTGTAGATGTCTTGATGGCTTGGGA
LOC_Os07g11659
Target Sequence 
GAGCACATCAACCATGTCTATGTCGGTCAGGAGAGTGCTTGGTCTCGGAATATGGTTTCTTTGTTTGTTTCATGTGTAGA
TGTCTTGATGGCTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10222.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis