Browse Element(s) Details


OsAffx.10570.1.S1_at

Description gb:NM_184339.1
DB_XREF= gi:34895757
GEN=P0024G09.25
TID=OsAffx.10570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0024G09.25 (P0024G09.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g052901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05240NANA1+2462268..2462616hypothetical protein
LOC_Os01g05250OsAffx.23023.1.S1_at5/111+2471358..2471958expressed protein
LOC_Os01g05260OsAffx.10914.1.S1_at11/111+2474878..2476803hypothetical protein
LOC_Os01g05280OsAffx.23018.1.S1_at11/111+2484189..2484788hypothetical protein
LOC_Os01g05290OsAffx.10570.1.S1_at1/111+2485158..2485421hypothetical protein
LOC_Os01g05300OsAffx.10809.1.S1_at11/111+2495071..2495542hypothetical protein
LOC_Os01g05310OsAffx.23023.1.S1_at11/111+2497152..2497939hypothetical protein
LOC_Os01g05320OsAffx.19542.3.S1_x_at7/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.9949.1.S1_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05320OsAffx.21754.1.S1_x_at1/111+2501190..2507505retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10570.1.S1_at--841--6091Chr01:2413212..2413236 (25 bp)
GAGTCAGCGTAAGTCAATTAGGCAG
NONE
OsAffx.10570.1.S1_at--192--4054Chr01:2485399..2485423 (25 bp)
CGATGGCGACCGGAAATCCGTGGAC
NONE
OsAffx.10570.1.S1_at--958--2271Chr01:2413042..2413066 (25 bp)
AAATCCGTGGACGAGCGGGATCTCG
NONE
OsAffx.10570.1.S1_at--463--9291Chr01:2412974..2412998 (25 bp)
TCCGCAAGTCCGCAAGAAACGCGAT
NONE
OsAffx.10570.1.S1_at--950--1413Chr01:2412960..2412984 (25 bp)
AGAAACGCGATAGCACAGTGGAGAT
NONE
OsAffx.10570.1.S1_at--842--8371Chr01:2412607..2412631 (25 bp)
GGCGAGCTCGCTGAACTTTTTCGTC
NONE
OsAffx.10570.1.S1_at--1156--2031Chr01:2412593..2412617 (25 bp)
ACTTTTTCGTCGCATTGCTGCTACA
NONE
OsAffx.10570.1.S1_at--518--7231Chr01:2412585..2412609 (25 bp)
GTCGCATTGCTGCTACAGCATCATG
NONE
OsAffx.10570.1.S1_at--969--10731Chr01:2412560..2412584 (25 bp)
TTGCATCCCGCGACGTGACAATGAG
NONE
OsAffx.10570.1.S1_at--998--1291Chr01:2412527..2412551 (25 bp)
AGAGGCGACGAACCATGTTTCCGTG
NONE
OsAffx.10570.1.S1_at--723--8771Chr01:2412512..2412536 (25 bp)
TGTTTCCGTGCTGGAGATTGGGCCT
NONE
Target Sequence 
GAGTCAGCGTAAGTCAATTAGGCAGGAACTCAAAGCACATCAACGATGCTGTCTTTCAAACCCCAAGTGCCCAACACCTA
CCACAAGCGATCCCGACCAGATCCTGGCCGAGGACGGGCGGCGCGGCGAGGGGTTGGCCGGAGAAGACGAATCCCGGCGA
TGGCGACCGGAAATCCGTGGACGAGCGGGATCTCGGCGCCGCATCACCGCCCCACAGGCTACTGCCTCAACCACAACCTC
CGCAAGTCCGCAAGAAACGCGATAGCACAGTGGAGATAGGGAAGGTTCCACTTGCAGGAGGCGGCGAGCTCGCTGAACTT
TTTCGTCGCATTGCTGCTACAGCATCATGTTGCATCCCGCGACGTGACAATGAGGAGGAGGAAGAGGCGACGAACCATGT
TTCCGTGCTGGAGATTGGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis