Browse Element(s) Details


OsAffx.10695.1.S1_at

Description gb:NM_183738.1
DB_XREF= gi:34894603
GEN=B1012D10.24
TID=OsAffx.10695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1012D10.24 (B1012D10.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g360302/11expressed protein
LOC_Os01g110541/11Phosphoenolpyruvate carboxylase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36010OsAffx.32048.1.S1_at11/1112+22009539..22009883hypothetical protein
LOC_Os12g36020NANA12+22012783..22014060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36030Os.18139.1.S1_at11/1112+22014244..22020753expressed protein
LOC_Os12g36030Os.20279.1.S1_at11/1112+22014244..22020753expressed protein
LOC_Os12g36030Os.57304.1.S1_at11/1112+22014244..22020753expressed protein
LOC_Os12g36030Os.51777.1.S1_at2/1112+22014244..22020753expressed protein
LOC_Os12g36030OsAffx.10695.1.S1_at2/1112+22014244..22020753expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10695.1.S1_at--563--916Chr03:13813610..13814073 (25 bp)
AGGCTTTGTTCAGCCATATGCCACA
NONE
OsAffx.10695.1.S1_at--960--255Chr01:11933260..11933284 (25 bp)
ATATGCCACAAAATACGCCGCCTTT
NONE
OsAffx.10695.1.S1_at--57--3154Chr01:11933290..11933314 (25 bp)
AATTCCATCGTGCAAATACCTCGTC
NONE
OsAffx.10695.1.S1_at--426--2471Chr01:11933315..11933339 (25 bp)
AACACCTCCAAACAGCCTATGGGAT
NONE
OsAffx.10695.1.S1_at--595--5691Chr01:11933351..11933375 (25 bp)
GACTTCCGATTGATCGCCATCGATC
NONE
OsAffx.10695.1.S1_at--512--4431Chr01:11933366..11933390 (25 bp)
GCCATCGATCTAGTCGCGAGCCGAA
NONE
OsAffx.10695.1.S1_at--827--5417Chr12:6957817..6957841 (25 bp)
GAACGCAACTCATCGAAAGGCCCGG
NONE
OsAffx.10695.1.S1_at--637--2312Chr01:11933498..11933522 (25 bp)
AAAGTGTTCGAATCCACCGATCGAG
NONE
OsAffx.10695.1.S1_at--437--40717Chr12:22015498..22015522 (25 bp)
CGAGAGTAGCTCACCGGAAAGTCCG
LOC_Os12g36030
OsAffx.10695.1.S1_at--833--71515Chr12:22015597..22015621 (25 bp)
GTCTAGTCATCTCCCTGTTGAAAGC
LOC_Os12g36030
OsAffx.10695.1.S1_at--1111--5532Chr11:20501363..20501382 (20 bp)
GAAAGCAGCCATCGACGGTTTCGGC
NONE
Target Sequence 
AGGCTTTGTTCAGCCATATGCCACAAAATACGCCGCCTTTGAAACAATTCCATCGTGCAAATACCTCGTCAACACCTCCA
AACAGCCTATGGGATCCACCCGCTCCGACTTCCGATTGATCGCCATCGATCTAGTCGCGAGCCGAAGCCGACAAGTCGCA
TGCCGTCTTCTCAGCCGCCGAACGACCCGAGTGCTATGTCTAGCCATCTCCCTGTCGAACGCAACTCATCGAAAGGCCCG
GGCCACCCCGCCCAAAGTGTTCGAATCCACCGATCGAGAACGCCGATCGCCTCCAACTTCAATCAACCCGAGCATGCGGC
CGCACGTCTCCCTGTCGAGAGTAGCTCACCGGAAAGTCCGGGCCACCTGCCCGAAGTGTCCGACCCGCCGATTGGATCGC
CAATCGCTTCCGCCACCATCAACCCGAGCACCACGTCTAGTCATCTCCCTGTTGAAAGCAGCCATCGACGGTTTCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis