Browse Element(s) Details


OsAffx.11037.1.S1_s_at

Description gb:NM_188708.1
DB_XREF= gi:34904499
GEN=OSJNBa0010K01.12
TID=OsAffx.11037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0010K01.12 (OSJNBa0010K01.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1383011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13800Os.17143.1.S1_at11/111+7735876..7739680Receptor-like protein kinase 5 precursor, putative, expressed
LOC_Os01g13810OsAffx.25616.2.S1_x_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.3.S1_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.5.S1_x_at10/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.2.S1_at8/111+7741045..7744548expressed protein
LOC_Os01g13820NANA1+7746206..7751216retrotransposon protein, putative, unclassified
LOC_Os01g13830OsAffx.11037.1.S1_s_at11/111+7752643..7757322expressed protein
LOC_Os01g13840Os.5139.2.S1_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13840Os.5139.2.S1_x_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13850OsAffx.23229.1.S1_at11/111+7763827..7764555hypothetical protein
LOC_Os01g13860OsAffx.25616.1.S1_x_at5/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.2.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.5.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13870NANA1+7772847..7774130expressed protein
LOC_Os01g13880OsAffx.11039.1.S1_at11/111+7777053..7777856hypothetical protein
LOC_Os01g13890NANA1+7779605..7785497retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11037.1.S1_s_at--858--1371Chr01:7755334..7755358 (25 bp)
AGAGCGCGCTGTTTTGCACGTTCCA
LOC_Os01g13830
OsAffx.11037.1.S1_s_at--577--1891Chr01:7755351..7755375 (25 bp)
ACGTTCCAGTGCAAGGCGCGCTCTG
LOC_Os01g13830
OsAffx.11037.1.S1_s_at--279--6631Chr01:7755394..7755418 (25 bp)
GTTGGGCGCAGGACCTCCTACTGGA
LOC_Os01g13830
OsAffx.11037.1.S1_s_at--366--3811Chr01:7755408..7755432 (25 bp)
CTCCTACTGGACGATTTTGCTGTGC
LOC_Os01g13830
OsAffx.11037.1.S1_s_at--1111--151Chr01:7755421..7755442 (22 bp)
ATTTTGCTGTGCCATGCGAGAGCCA
LOC_Os01g13830
OsAffx.11037.1.S1_s_at--711--611Chr01:7755434..7755504 (25 bp)
ATGCGAGAGCCACCATTCCTGCGCG
LOC_Os01g13830
OsAffx.11037.1.S1_s_at--564--91Chr01:7755494..7755518 (25 bp)
ATTCCTGCGCGCCTGGGACATTCGG
LOC_Os01g13830
OsAffx.11037.1.S1_s_at--263--8631Chr01:7755507..7755531 (25 bp)
TGGGACATTCGGCAGCAAGAACTCG
LOC_Os01g13830
OsAffx.11037.1.S1_s_at--978--5151Chr01:7755521..7755545 (25 bp)
GCAAGAACTCGAGGTTCACCACCGG
LOC_Os01g13830
OsAffx.11037.1.S1_s_at--738--4591Chr01:7755560..7755584 (25 bp)
GCGACGGCCGCACAGTGATTCGCCA
LOC_Os01g13830
OsAffx.11037.1.S1_s_at--366--8831Chr01:7755575..7755599 (25 bp)
TGATTCGCCACGTCAGTGACCCAGA
LOC_Os01g13830
Target Sequence 
AGAGCGCGCTGTTTTGCACGTTCCAGTGCAAGGCGCGCTCTGGCGAGGTCGCCGGACACCGTTGGGCGCAGGACCTCCTA
CTGGACGATTTTGCTGTGCCATGCGAGAGCCACCATTCCTGCGCGCCTGGGACATTCGGCAGCAAGAACTCGAGGTTCAC
CACCGGCCGCGTGATCGACAGCGACGGCCGCACAGTGATTCGCCACGTCAGTGACCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11037.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis