Browse Element(s) Details


OsAffx.11084.2.S1_at

Description tigr:9629.m01698
TID=OsAffx.11084.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DnaJ protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1704010/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17010Os.27779.1.S1_at11/111+9735221..9741506Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os01g17020Os.14702.1.S1_a_at10/111+9746901..9750547expressed protein
LOC_Os01g17030NANA1+9751320..9752575DnaJ domain containing protein
LOC_Os01g17040OsAffx.11084.2.S1_at10/111+9761751..9765259DnaJ domain containing protein, expressed
LOC_Os01g17050OsAffx.22181.1.S1_s_at11/111+9766796..9767815VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11084.2.S1_at--227--7191Chr01:9762047..9762071 (25 bp)
GTCGGCCTCGTATGACTACGGCTAC
LOC_Os01g17040
OsAffx.11084.2.S1_at--124--4471Chr01:9762135..9762159 (25 bp)
GCCTCGGCCGGATTCGATTGGGACT
LOC_Os01g17040
OsAffx.11084.2.S1_at--412--6571Chr01:9762145..9762169 (25 bp)
GATTCGATTGGGACTTGCTGCTGAA
LOC_Os01g17040
OsAffx.11084.2.S1_at--1007--3951Chr01:9762172..9762196 (25 bp)
CGGTCACGCGGCGAGGGTTCCTCAT
LOC_Os01g17040
OsAffx.11084.2.S1_at--233--7911Chr01:9762187..9762211 (25 bp)
GGTTCCTCATCAATCTGGGTTTCGC
LOC_Os01g17040
OsAffx.11084.2.S1_at--717--8631NONE
TGGGTTTCGCCAGTGTACTGCTGAC
NONE
OsAffx.11084.2.S1_at--899--9911Chr01:9762987..9763011 (25 bp)
TACTGCTGACTGGAGCAGCTTTTCT
LOC_Os01g17040
OsAffx.11084.2.S1_at--435--8052Chr01:9762998..9763022 (25 bp)
GGAGCAGCTTTTCTTGATGGAAGTA
LOC_Os01g17040
OsAffx.11084.2.S1_at--751--3131Chr01:9763046..9763173 (25 bp)
AATTCTGGGCTCATTCAATTGACCC
LOC_Os01g17040
OsAffx.11084.2.S1_at--311--10751Chr01:9763167..9763191 (25 bp)
TTGACCCTCTACACTTTTGAACTTA
LOC_Os01g17040
OsAffx.11084.2.S1_at--740--51Chr01:9763199..9763223 (25 bp)
ATTGATCAAACACCCACTGGCTATT
LOC_Os01g17040
Target Sequence 
GTCGGCCTCGTATGACTACGGCTACGGCTACGGCCACAGACGCGGAGGTGGTACCTGGCGCCGGCCGCCTCCGGGCGGAG
GGGGCGCCGCCTCGGCCGGATTCGATTGGGACTTGCTGCTGAAGTCGGTCACGCGGCGAGGGTTCCTCATCAATCTGGGT
TTCGCCAGTGTACTGCTGACTGGAGCAGCTTTTCTTGATGGAAGTATTTTAGAAATCTGGAAGATGAATAATTCTGGGCT
CATTCAATTGACCCTCTACACTTTTGAACTTAGTGATGTATTGATCAAACACCCACTGGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11084.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis