Browse Element(s) Details


OsAffx.11139.1.S1_at

Description tigr:9629.m02028
TID=OsAffx.11139.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2124011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21210NANA1+11814088..11821536retrotransposon protein, putative, unclassified
LOC_Os01g21220NANA1+11823453..11825715retrotransposon, putative, centromere-specific
LOC_Os01g21230NANA1+11828491..11834481MtN3/saliva family protein
LOC_Os01g21240OsAffx.11139.1.S1_at11/111+11838033..11841455NB-ARC domain containing protein, expressed
LOC_Os01g21250Os.2915.1.S1_at1/111+11846401..11846813Late embryogenesis abundant protein
LOC_Os01g21260NANA1+11860826..11861984hypothetical protein
LOC_Os01g21270OsAffx.11140.1.S1_at11/111+11862345..11864165hypothetical protein
LOC_Os01g21280Os.17805.1.S3_s_at11/111+11865489..11867693hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11139.1.S1_at--777--6791Chr01:11840865..11840889 (25 bp)
GTTATTCGTATTCGCGAGATCTCGA
LOC_Os01g21240
OsAffx.11139.1.S1_at--580--10691Chr01:11840921..11840945 (25 bp)
TTGCCTCCTTTTCCTTAGATTGAGT
LOC_Os01g21240
OsAffx.11139.1.S1_at--548--2771Chr01:11840965..11840989 (25 bp)
AAGACGCCACCATTGTTGTCTGCAG
LOC_Os01g21240
OsAffx.11139.1.S1_at--455--7171Chr01:11840982..11841006 (25 bp)
GTCTGCAGTAGGACATTCCAACATC
LOC_Os01g21240
OsAffx.11139.1.S1_at--672--7271Chr01:11841033..11841057 (25 bp)
GTGCCATGCCTGGTGTTTGAGCCAT
LOC_Os01g21240
OsAffx.11139.1.S1_at--931--6851Chr01:11841047..11841071 (25 bp)
GTTTGAGCCATTGGCGATGCCCAGA
LOC_Os01g21240
OsAffx.11139.1.S1_at--713--6351Chr01:11841062..11841086 (25 bp)
GATGCCCAGACTGCAGATCCTGAAT
LOC_Os01g21240
OsAffx.11139.1.S1_at--623--8751Chr01:11841128..11841152 (25 bp)
TGTACCATGTGAACCGGCTGGCATC
LOC_Os01g21240
OsAffx.11139.1.S1_at--1153--5931Chr01:11841153..11841177 (25 bp)
GAGCACCTGACTAACCTTATGCAAA
LOC_Os01g21240
OsAffx.11139.1.S1_at--88--2091Chr01:11841185..11841209 (25 bp)
ACATATTCATCTAGCTCACCATTGG
LOC_Os01g21240
OsAffx.11139.1.S1_at--1013--1531Chr01:11841352..11841376 (25 bp)
AGCATCCTGGGATTCACTATGTTAA
LOC_Os01g21240
Target Sequence 
GTTATTCGTATTCGCGAGATCTCGAAGGATGGGTTTGGTGTTCTTGCAAGGTTGCCTTGCCTCCTTTTCCTTAGATTGAG
TGTTCATCGTGTCAAGGAAGAAGACGCCACCATTGTTGTCTGCAGTAGGACATTCCAACATCTGAAGGAATTTTGGTTCA
GATATAAGGTGCCATGCCTGGTGTTTGAGCCATTGGCGATGCCCAGACTGCAGATCCTGAATATACAATTCGACGAAGAA
TGCCTGTATGGAAGGGATGATGGTGTACCATGTGAACCGGCTGGCATCGAGCACCTGACTAACCTTATGCAAATCTCTGC
ACATATTCATCTAGCTCACCATTGGATGTGGCAAACTCCGGCCTTGCCGCGAAGAAAGGTTAAGCATTTTAGTGAAAGAC
ATGATGAGGATGGCCATGGCCAGGTTGAAGAAGAAGCTCCAGTGTACAAAAAGGCAGCGGAGGCCATGTTGACAAGAGCA
ACCAGCAAGCATCCTGGGATTCACTATGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis