Browse Element(s) Details


Os.2915.1.S1_at

Description gb:AF323612.1
DB_XREF= gi:13249143
GEN=ZIP
TID=Os.2915.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.2915 (NCBI UniGene Cluster)
DEF=Oryza sativa zinc-induced protein (ZIP) mRNA, complete cds.
PROD=zinc-induced protein
FL= gb:AF323612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g212501/11Late embryogenesis abundant protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21210NANA1+11814088..11821536retrotransposon protein, putative, unclassified
LOC_Os01g21220NANA1+11823453..11825715retrotransposon, putative, centromere-specific
LOC_Os01g21230NANA1+11828491..11834481MtN3/saliva family protein
LOC_Os01g21240OsAffx.11139.1.S1_at11/111+11838033..11841455NB-ARC domain containing protein, expressed
LOC_Os01g21250Os.2915.1.S1_at1/111+11846401..11846813Late embryogenesis abundant protein
LOC_Os01g21260NANA1+11860826..11861984hypothetical protein
LOC_Os01g21270OsAffx.11140.1.S1_at11/111+11862345..11864165hypothetical protein
LOC_Os01g21280Os.17805.1.S3_s_at11/111+11865489..11867693hypothetical protein
LOC_Os01g21290Os.40360.1.S1_at9/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.5.S1_x_at8/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.2.S1_x_at8/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40360.1.S1_x_at6/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.4.S1_x_at3/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.4.S1_at1/111+11869336..11872539hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0009409biological_processresponse to cold
GO:0009790biological_processembryonic development
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2915.1.S1_at--857--6531Chr01:11846851..11846875 (25 bp)
GATTTACCAGCTCATTTTTACATAT
NONE
Os.2915.1.S1_at--212--8731Chr01:11846769..11846792 (24 bp)
TGTCTCAGCCTTCTGGCACAAAGGA
LOC_Os01g21250
Os.2915.1.S1_at--1136--851Chr01:11846391..11846415 (25 bp)
ATGGCTGCCAACTGAGACAGATCGT
NONE
Os.2915.1.S1_at--214--1271Chr01:11846373..11846397 (25 bp)
AGATCGTCGACGTATCGGTCGGTCG
NONE
Os.2915.1.S1_at--291--7191Chr01:11846356..11846380 (25 bp)
GTCGGTCGAGGCTAGCTATGTACTC
NONE
Os.2915.1.S1_at--726--751Chr01:11846339..11846363 (25 bp)
ATGTACTCTGCTTTGAGATGCGCGC
NONE
Os.2915.1.S1_at--722--1291Chr01:11846328..11846348 (21 bp)
AGATGCGCGCTACCTAGTTGAATCG
NONE
Os.2915.1.S1_at--545--3711NONE
CTAGTTGAATCGCTGTCGCTGGCCT
NONE
Os.2915.1.S1_at--248--6231Chr01:11846271..11846295 (25 bp)
GAGGCCTAATTTGAGTTGCTTCGTT
NONE
Os.2915.1.S1_at--610--9071Chr01:11846255..11846279 (25 bp)
TGCTTCGTTGAGGACGACTGCTTCT
NONE
Os.2915.1.S1_at--307--7151Chr01:11846222..11846246 (25 bp)
GTCTTCTCGGTGTTCTCTAATATGA
NONE
Target Sequence 
GATTTACCAGCTCATTTTTACATATAGTTCAAACTTAGAGAGAGAAAGAAAGTTGATCATCCATGGAGAGGGTTGCATCG
AGCTGTCTCAGCCTTCTGGCACAAAGGAGGGGTTACTCGGTGGCGGCGGCCGTGGCGAAGGGAGCCGGCCGGAGGGCGGA
CGAGAAGAAGGTGGCGGCGGCGGTGGCCAAGCGCACGATGGCGAAGGCCGCCGAGGAGAAGACGGCGTGGGTGCCGGACC
CGGTGACCGGGTACTACCGGCCGGCCGGCGGCGCAAAGGAGGTGGACGCGGCGGANCTGCGCGCCAAGCTGCTCTCCAAC
TCCAAGAGGATGGCTGCCAACTGAGACAGATCGTCGACGTATCGGTCGGTCGAGGCTAGCTATGTACTCTGCTTTGAGAT
GCGCGCTACCTAGTTGAATCGCTGTCGCTGGCCTCCTTTTGAGAGCTTGTGAGGCCTAATTTGAGTTGCTTCGTTGAGGA
CGACTGCTTCTTTGGGTTCGTCTTCTCGGTGTTCTCTAATATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis