Browse Element(s) Details


OsAffx.11198.1.S1_at

Description tigr:9629.m02432
TID=OsAffx.11198.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutathione S-transferase, C-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2510010/11Glutathione S-transferase IV, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25070OsAffx.23384.1.S1_at11/111+14132470..14132748hypothetical protein
LOC_Os01g25080NANA1+14135454..14135777hypothetical protein
LOC_Os01g25090NANA1+14145776..14147765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25100OsAffx.11198.1.S1_at10/111+14149730..14151018Glutathione S-transferase IV, putative, expressed
LOC_Os01g25110Os.22583.1.A1_at3/111+14153724..14158296Clathrin adaptor complex small chain family protein
LOC_Os01g25120Os.14491.2.S1_x_at5/111+14160949..14164649transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25120Os.47463.1.S1_x_at5/111+14160949..14164649transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25130NANA1+14165822..14166232transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25140NANA1+14167642..14170947transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25150OsAffx.23385.1.S1_at9/111+14171974..14174797Jacalin-like lectin domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11198.1.S1_at--233--5451Chr01:14150375..14150395 (21 bp)
GAACCCATTCGGTCAGATTCCAGTG
LOC_Os01g25100
OsAffx.11198.1.S1_at--395--111Chr01:14150377..14150401 (25 bp)
ATTCGGTCAGATTCCAGTGCTGGAG
LOC_Os01g25100
OsAffx.11198.1.S1_at--1066--10651Chr01:14150388..14150412 (25 bp)
TTCCAGTGCTGGAGGACGGTGACCT
LOC_Os01g25100
OsAffx.11198.1.S1_at--990--8011Chr01:14150398..14150422 (25 bp)
GGAGGACGGTGACCTGACACTCTAC
LOC_Os01g25100
OsAffx.11198.1.S1_at--69--8971NONE
TGACACTCTACCAATCACACGCGAT
NONE
OsAffx.11198.1.S1_at--1120--371Chr01:14150514..14150538 (25 bp)
ATCACACGCGATCGCTAGGTACGTT
LOC_Os01g25100
OsAffx.11198.1.S1_at--256--10091Chr01:14150529..14150553 (25 bp)
TAGGTACGTTCTCGGCAAGCACAAG
LOC_Os01g25100
OsAffx.11198.1.S1_at--765--8531Chr01:14150624..14150648 (25 bp)
TGGAGACCCACCAGTACGAGGCCGC
LOC_Os01g25100
OsAffx.11198.1.S1_at--367--8991Chr01:14150651..14150675 (25 bp)
TGAAGCCCATCGTGTGGCACTGCCT
LOC_Os01g25100
OsAffx.11198.1.S1_at--903--9391Chr01:14150779..14150803 (25 bp)
TCGTCGGCCGGCAGGTACAGCTACC
LOC_Os01g25100
OsAffx.11198.1.S1_at--950--6311Chr01:14150862..14150886 (25 bp)
GATGCACTACTTCACAGCGACGGAG
LOC_Os01g25100
Target Sequence 
GAACCCATTCGGTCAGATTCCAGTGCTGGAGGACGGTGACCTGACACTCTACCAATCACACGCGATCGCTAGGTACGTTC
TCGGCAAGCACAAGCCGGAGCTCCTGGGGCTCGGCGAAGGCGGCAGCGTGGAGGAGTCGGCAATGGTGGACATGTGGCTG
GAGGTGGAGACCCACCAGTACGAGGCCGCCGTGAAGCCCATCGTGTGGCACTGCCTCGTCCACCAGCACGTCGGCCTGGT
GCGCGACCAGGGCGTCGTGGACGAGAGCGTGGAGAAGCTGAGGGCGGTGCTGGAGGTGTACGAGGCGAGGCTGTCGTCGT
CGTCGGCCGGCAGGTACAGCTACCTCGCCGGCGGCGGCAGCGGCGACCGCGTCAGCCTCGCCGACCTCAGCCACGTCCCG
CTGATGCACTACTTCACAGCGACGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis