Browse Element(s) Details


OsAffx.11282.1.S1_at

Description tigr:9629.m03010
TID=OsAffx.11282.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3227011/11hypothetical protein
LOC_Os10g280301/11prolyl oligopeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32250Os.46012.2.S1_x_at7/111+17994033..17999319retrotransposon protein, putative, unclassified
LOC_Os01g32250Os.27088.1.A1_x_at5/111+17994033..17999319retrotransposon protein, putative, unclassified
LOC_Os01g32250Os.46012.3.S1_x_at3/111+17994033..17999319retrotransposon protein, putative, unclassified
LOC_Os01g32270OsAffx.11282.1.S1_at11/111+18018728..18020523hypothetical protein
LOC_Os01g32280Os.18538.1.S1_at11/111+18023993..18033217integral membrane family protein, putative, expressed
LOC_Os01g32300Os.4868.1.S1_at11/111+18035674..18040300expressed protein
LOC_Os01g32310OsAffx.23472.1.S1_at11/111+18041014..18041487hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11282.1.S1_at--99--10451Chr01:18020236..18020256 (21 bp)
TTACGCGAGGAGGAATGGTACCCAT
LOC_Os01g32270
OsAffx.11282.1.S1_at--444--7851Chr01:18020248..18020272 (25 bp)
GGTACCCATGTTTCATATCGAGGCA
LOC_Os01g32270
OsAffx.11282.1.S1_at--765--511Chr01:18020264..18020288 (25 bp)
ATCGAGGCATCGTCGCTGATTTCAA
LOC_Os01g32270
OsAffx.11282.1.S1_at--169--4752Chr10:14218688..14218755 (24 bp)
GCTGATTTCAACAGAGTCCCCATTG
LOC_Os10g28030
OsAffx.11282.1.S1_at--1135--2111Chr01:18020288..18020312 (25 bp)
ACAGAGTCCCCATTGATTTCAACAC
LOC_Os01g32270
OsAffx.11282.1.S1_at--428--6531Chr01:18020302..18020326 (25 bp)
GATTTCAACACCAACGCTGGGTATT
LOC_Os01g32270
OsAffx.11282.1.S1_at--3--3231Chr01:18020313..18020337 (25 bp)
CAACGCTGGGTATTCCCCAAATTTG
LOC_Os01g32270
OsAffx.11282.1.S1_at--1159--6511Chr01:18020356..18020380 (25 bp)
GTAGACGATTACTCTTTGCCCGACC
LOC_Os01g32270
OsAffx.11282.1.S1_at--842--5771Chr01:18020401..18020425 (25 bp)
GACGATGACTGGAACACCGACGAGA
LOC_Os01g32270
OsAffx.11282.1.S1_at--969--371Chr01:18020442..18020466 (25 bp)
ATCACCCGACAAGAATGCCTACTGG
LOC_Os01g32270
OsAffx.11282.1.S1_at--763--9171Chr01:18020457..18020481 (25 bp)
TGCCTACTGGAACGATGATGACGAC
LOC_Os01g32270
Target Sequence 
TTACGCGAGGAGGAATGGTACCCATGTTTCATATCGAGGCATCGTCGCTGATTTCAACAGAGTCCCCATTGATTTCAACA
CCAACGCTGGGTATTCCCCAAATTTGGAATTAATGGGGTTAGTTGTAGACGATTACTCTTTGCCCGACCCCGGTGATGAG
GAAGACAAAGACGATGACTGGAACACCGACGAGAAGGCCCCTCCGCTTGCATCACCCGACAAGAATGCCTACTGGAACGA
TGATGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis