Browse Element(s) Details


OsAffx.11311.1.S1_x_at

Description tigr:9629.m03201
TID=OsAffx.11311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3415011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34140Os.14491.2.S1_x_at3/111+19132438..19140507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34140Os.47463.1.S1_x_at2/111+19132438..19140507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34150OsAffx.11311.1.S1_x_at11/111+19158127..19158447hypothetical protein
LOC_Os01g34164NANA1+19167434..19167644NA
LOC_Os01g34180NANA1+19168229..19168432hypothetical protein
LOC_Os01g34190Os.17820.1.A1_at11/111+19175205..19178661G-patch domain containing protein, expressed
LOC_Os01g34200Os.28207.1.S1_at10/111+19180422..19184170rRNA processing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11311.1.S1_x_at--769--3772Chr01:19158206..19158230 (25 bp)
CTCGGACGGTGAAGGAGGCAGCAGT
LOC_Os01g34150
OsAffx.11311.1.S1_x_at--392--10631Chr01:19158244..19158268 (25 bp)
TTCCAGATCCGGTGGTCCCGAACCA
LOC_Os01g34150
OsAffx.11311.1.S1_x_at--706--4211Chr01:19158261..19158285 (25 bp)
CCGAACCACCTGGAGACCAGATTTG
LOC_Os01g34150
OsAffx.11311.1.S1_x_at--667--4111Chr01:19158262..19158286 (25 bp)
CGAACCACCTGGAGACCAGATTTGG
LOC_Os01g34150
OsAffx.11311.1.S1_x_at--280--5431Chr01:19158263..19158287 (25 bp)
GAACCACCTGGAGACCAGATTTGGC
LOC_Os01g34150
OsAffx.11311.1.S1_x_at--365--2651Chr01:19158264..19158288 (25 bp)
AACCACCTGGAGACCAGATTTGGCA
LOC_Os01g34150
OsAffx.11311.1.S1_x_at--541--1771Chr01:19158268..19158292 (25 bp)
ACCTGGAGACCAGATTTGGCACCCA
LOC_Os01g34150
OsAffx.11311.1.S1_x_at--227--4251Chr01:19158269..19158293 (25 bp)
CCTGGAGACCAGATTTGGCACCCAC
LOC_Os01g34150
OsAffx.11311.1.S1_x_at--457--8551Chr01:19158271..19158295 (25 bp)
TGGAGACCAGATTTGGCACCCACCA
LOC_Os01g34150
OsAffx.11311.1.S1_x_at--286--1271Chr01:19158279..19158303 (25 bp)
AGATTTGGCACCCACCACCTCAAGG
LOC_Os01g34150
OsAffx.11311.1.S1_x_at--628--10231Chr01:19158282..19158306 (25 bp)
TTTGGCACCCACCACCTCAAGGCGA
LOC_Os01g34150
Target Sequence 
CTCGGACGGTGAAGGAGGCAGCAGTCGGAGCCCGGGGGTTCCAGATCCGGTGGTCCCGAACCACCTGGAGACCAGATTTG
GCACCCACCACCTCAAGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11311.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis