Browse Element(s) Details


OsAffx.11634.2.S1_x_at

Description tigr:9629.m05614
TID=OsAffx.11634.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5729411/11hypothetical protein
LOC_Os01g5732411/11hypothetical protein
LOC_Os12g081402/11pentatricopeptide, putative, expressed
LOC_Os03g138301/11pentatricopeptide, putative, expressed
LOC_Os12g329401/11Sugar transporter family protein, expressed
LOC_Os05g241501/11pentatricopeptide, putative, expressed
LOC_Os11g078701/11Type III restriction enzyme, res subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57260Os.11144.1.S1_at11/111+33416058..33417156VPS28 protein homolog 2, putative, expressed
LOC_Os01g57270Os.15222.1.S1_at10/111+33418551..33423079rust resistance protein, putative, expressed
LOC_Os01g57280Os.35231.1.S1_at11/111+33424930..33430752Rp1, putative, expressed
LOC_Os01g57294OsAffx.11634.2.S1_x_at11/111+33442053..33442835hypothetical protein
LOC_Os01g57294OsAffx.11634.1.S1_x_at8/111+33442053..33442835hypothetical protein
LOC_Os01g57310Os.35231.1.S1_at10/111+33447347..33451219Rp1, putative
LOC_Os01g57324OsAffx.11634.2.S1_x_at11/111+33462681..33463463hypothetical protein
LOC_Os01g57324OsAffx.11634.1.S1_x_at8/111+33462681..33463463hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0004525molecular_functionribonuclease III activity
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0008026molecular_functionATP-dependent helicase activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11634.2.S1_x_at--424--3994Chr12:4163175..4163199 (25 bp)
CGTGGTCGCTTGGAACGCCATGATT
LOC_Os12g08140
OsAffx.11634.2.S1_x_at--45--4134Chr12:4163181..4163205 (25 bp)
CGCTTGGAACGCCATGATTTCTGGG
LOC_Os12g08140
OsAffx.11634.2.S1_x_at--1100--8312Chr01:33462905..33462929 (25 bp)
GGCTCAGGTGGTGCCTGATTCCGCC
LOC_Os01g57324
OsAffx.11634.2.S1_x_at--1153--8812Chr01:33462920..33462944 (25 bp)
TGATTCCGCCACGTTTGTTGCTACA
LOC_Os01g57324
OsAffx.11634.2.S1_x_at--712--10792Chr01:33462934..33462958 (25 bp)
TTGTTGCTACACTCTACTCGCCGAA
LOC_Os01g57324
OsAffx.11634.2.S1_x_at--512--9532Chr01:33462946..33462970 (25 bp)
TCTACTCGCCGAAGTTCGATTCCCT
LOC_Os01g57324
OsAffx.11634.2.S1_x_at--922--534Chr11:4017815..4017834 (20 bp)
ATCGCCGCCGGGAGATTCGTGGAGG
LOC_Os11g07870
OsAffx.11634.2.S1_x_at--180--8733Chr01:33463333..33463357 (25 bp)
TGTCGGCTAGCCTGCGCAGATCGAG
LOC_Os01g57324
OsAffx.11634.2.S1_x_at--718--9992Chr01:33463340..33463364 (25 bp)
TAGCCTGCGCAGATCGAGAAGTGAG
LOC_Os01g57324
OsAffx.11634.2.S1_x_at--1003--5972Chr01:33463391..33463415 (25 bp)
GAGAAATGTGTTGAGGTGGCATCCT
LOC_Os01g57324
OsAffx.11634.2.S1_x_at--205--2993Chr03:27185310..27185768 (25 bp)
AATGTGTTGAGGTGGCATCCTGACA
NONE
Target Sequence 
CGTGGTCGCTTGGAACGCCATGATTTCTGGGGAGATGCAGGTGGCTCAGGTGGTGCCTGATTCCGCCACGTTTGTTGCTA
CACTCTACTCGCCGAAGTTCGATTCCCTCCTCGTCGCCGGCCCGCGCAAGCTGGCCCACGCGCGCCTCATCGTCGCCAGC
CACGGCAGCTTGCTCCCGCTCGTCACCAAGCTCGCCACCCTCACCGTGGCCGCCGGCGCCGTGCACTACGCGCACCTCCT
CGCGGCGTCCCACCACGCCTGCGACTTCTTCTTTCTCTCCTTGCTCACCTGCGCCGCCGCACATCGCAACCTCCCCGGCG
CGTCCATCGCCGCCGGGAGATTCGTGGAGGTGGTGGGGGCCAGCGGTGGCGAACTGGGCGGAGACGGCGTGGCCGACGAC
GCCGCCGCCGCCGCCGCGGCCCACCTCGCGGAGCGCGCGGCGGGCGCGCCCCACCGGCCTCCTCCCCTCCTGTCGGCTAG
CCTGCGCAGATCGAGAAGTGAGAGAGAGAAGGGAGAGAAGAGGGGAAGGAGAAATGTGTTGAGGTGGCATCCTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11634.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis