Browse Element(s) Details


OsAffx.11935.1.S1_at

Description tigr:9630.m00758
TID=OsAffx.11935.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0802010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08000OsAffx.11934.1.S1_x_at11/112+4190114..4190497hypothetical protein
LOC_Os02g08000OsAffx.11934.1.S1_at8/112+4190114..4190497hypothetical protein
LOC_Os02g08010OsAffx.24158.1.S1_at11/112+4196023..4208367Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os02g08020OsAffx.11935.1.S1_at10/112+4214152..4215191hypothetical protein
LOC_Os02g08030OsAffx.24159.1.S1_at11/112+4220947..4223596Possible apospory-associated protein C, putative
LOC_Os02g08040NANA2+4234866..4235081hypothetical protein
LOC_Os02g08050NANA2+4239050..4240507hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11935.1.S1_at--847--4271NONE
CCTGAATTGTCAGGCCATACACAAT
NONE
OsAffx.11935.1.S1_at--672--7111Chr02:4214344..4214365 (22 bp)
GTCAGGCCATACACAATGCACCAAG
LOC_Os02g08020
OsAffx.11935.1.S1_at--910--2871Chr02:4214322..4214346 (25 bp)
AAGGTGCAAAGCAACCTCGGACTTC
LOC_Os02g08020
OsAffx.11935.1.S1_at--1090--9431Chr02:4214306..4214330 (25 bp)
TCGGACTTCCACATCAGTTCGCGTA
LOC_Os02g08020
OsAffx.11935.1.S1_at--193--411Chr02:4214294..4214318 (25 bp)
ATCAGTTCGCGTACGCCAGCAAGGC
LOC_Os02g08020
OsAffx.11935.1.S1_at--619--2951Chr02:4214274..4214298 (25 bp)
AAGGCCGAGATTGTCCCCCGTGATG
LOC_Os02g08020
OsAffx.11935.1.S1_at--293--8251Chr02:4214250..4214274 (25 bp)
GGCACTTGTGCCTTGCAGAGGGCAT
LOC_Os02g08020
OsAffx.11935.1.S1_at--1008--3491Chr02:4214228..4214252 (25 bp)
CATGGGTGACTAGTTGTGGTGCACT
LOC_Os02g08020
OsAffx.11935.1.S1_at--1015--5691Chr02:4214221..4214245 (25 bp)
GACTAGTTGTGGTGCACTGCAACCC
LOC_Os02g08020
OsAffx.11935.1.S1_at--747--6971Chr02:4214194..4214218 (25 bp)
GTACCACTATCTTGTTGTGCGTCCT
LOC_Os02g08020
OsAffx.11935.1.S1_at--378--8811Chr02:4214182..4214206 (25 bp)
TGTTGTGCGTCCTCGTGTAGTCGTG
LOC_Os02g08020
Target Sequence 
CCTGAATTGTCAGGCCATACACAATGCACCAAGGTGCAAAGCAACCTCGGACTTCCACATCAGTTCGCGTACGCCAGCAA
GGCCGAGATTGTCCCCCGTGATGGCACTTGTGCCTTGCAGAGGGCATGGGTGACTAGTTGTGGTGCACTGCAACCCCCGT
ACCACTATCTTGTTGTGCGTCCTCGTGTAGTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis