Browse Element(s) Details


OsAffx.11943.1.S1_s_at

Description tigr:9630.m00815
TID=OsAffx.11943.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g090508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08530Os.57430.1.S1_at8/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08530Os.49254.1.S1_at1/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08540Os.20642.1.S1_at10/112+4616844..4622097expressed protein
LOC_Os02g08544Os.1983.1.S1_at11/112+4625422..4628855Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os02g09050OsAffx.11943.1.S1_s_at8/112+4629504..4630087expressed protein
LOC_Os02g09060Os.17743.1.S1_at10/112+4630335..4634546Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os02g09070OsAffx.11944.1.S1_at11/112+4640149..4641458zinc-binding protein, putative, expressed
LOC_Os02g09080OsAffx.24169.1.S1_x_at11/112+4650572..4653980expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11943.1.S1_s_at--173--8851Chr02:4630108..4630132 (25 bp)
TGATCTGAGCCGCTTAGCTCGGTAA
NONE
OsAffx.11943.1.S1_s_at--521--1671Chr02:4630101..4630125 (25 bp)
AGCCGCTTAGCTCGGTAAGAAGTAG
NONE
OsAffx.11943.1.S1_s_at--598--1191Chr02:4630081..4630105 (25 bp)
AGTAGGTGAGTAGCCTTCATGGAGA
NONE
OsAffx.11943.1.S1_s_at--753--4051Chr02:4630035..4630059 (25 bp)
CGATGAGCTCGCTGCGTGACAGGCT
LOC_Os02g09050
OsAffx.11943.1.S1_s_at--831--5731Chr02:4629808..4629832 (25 bp)
GACGGCCTTCTCTACCGGAGCTTCT
LOC_Os02g09050
OsAffx.11943.1.S1_s_at--665--4611Chr02:4629744..4629768 (25 bp)
GCGACCGGAAGCTTCGATCGGTTGC
LOC_Os02g09050
OsAffx.11943.1.S1_s_at--696--1551Chr02:4629735..4629759 (25 bp)
AGCTTCGATCGGTTGCAGAGGATAT
LOC_Os02g09050
OsAffx.11943.1.S1_s_at--91--6671Chr02:4629724..4629748 (25 bp)
GTTGCAGAGGATATGCGAGTATATA
LOC_Os02g09050
OsAffx.11943.1.S1_s_at--1026--4411Chr02:4629691..4629715 (25 bp)
GCCATGCACATATTAAGAAGCAATA
LOC_Os02g09050
OsAffx.11943.1.S1_s_at--1141--5171Chr02:4629672..4629696 (25 bp)
GCAATAGTTCAGAGTGTGTAGCACG
LOC_Os02g09050
OsAffx.11943.1.S1_s_at--674--7431Chr02:4629657..4629681 (25 bp)
GTGTAGCACGTATGGTTGCATGTAA
LOC_Os02g09050
Target Sequence 
TGATCTGAGCCGCTTAGCTCGGTAAGAAGTAGGTGAGTAGCCTTCATGGAGACGGAGGCCTCGCCGCCGTCGCCGATGAG
CTCGCTGCGTGACAGGCTGAGGGCCACGGTGTGCTGCTGCTTCGGCTACGGCGGCGGCGGCGGCGGAGGTGGCCTCGGCG
ACACGGTGGCGCAGTGGCGCCGCCGCGTCGGCTCGCCGGGGGAGTTCCGGTATGATCCCCTCAGCTACGCGCTCAACTTC
GACGAGGGCGCCGCCGACGACGAAGACGACGACTACGAGGCCGGCGACAACCACCGTGCCGACGGCCTTCTCTACCGGAG
CTTCTCACCGCCGGCGGCGGCCATCGCCGCCGTGTAAGCCTCCGGCGACCGGAAGCTTCGATCGGTTGCAGAGGATATGC
GAGTATATATATATTTAGCCATGCACATATTAAGAAGCAATAGTTCAGAGTGTGTAGCACGTATGGTTGCATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11943.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis