Browse Element(s) Details


OsAffx.12034.1.S1_at

Description tigr:9630.m01340
TID=OsAffx.12034.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1442011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14380NANA2+7899360..7900285Transposable element protein, putative, Retrotrans_gag
LOC_Os02g14390NANA2+7900460..7904213Zinc knuckle family protein
LOC_Os02g14400NANA2+7906694..7909710hypothetical protein
LOC_Os02g14410OsAffx.22699.1.S1_x_at1/112+7910272..7917027retrotransposon protein, putative, unclassified
LOC_Os02g14420OsAffx.12034.1.S1_at11/112+7922249..7922954hypothetical protein
LOC_Os02g14430Os.27793.1.S1_at11/112+7938410..7939831Peroxidase 52 precursor, putative, expressed
LOC_Os02g14430Os.27793.1.S1_x_at11/112+7938410..7939831Peroxidase 52 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12034.1.S1_at--1070--5291Chr02:7922291..7922315 (25 bp)
GAAGGCATCGGCAGCGACCTGACGA
LOC_Os02g14420
OsAffx.12034.1.S1_at--751--4971Chr02:7922295..7922319 (25 bp)
GCATCGGCAGCGACCTGACGACAAA
LOC_Os02g14420
OsAffx.12034.1.S1_at--56--491Chr02:7922297..7922321 (25 bp)
ATCGGCAGCGACCTGACGACAAAAG
LOC_Os02g14420
OsAffx.12034.1.S1_at--666--3371Chr02:7922302..7922326 (25 bp)
CAGCGACCTGACGACAAAAGGGCTT
LOC_Os02g14420
OsAffx.12034.1.S1_at--985--5811Chr02:7922306..7922330 (25 bp)
GACCTGACGACAAAAGGGCTTCCGG
LOC_Os02g14420
OsAffx.12034.1.S1_at--686--3831Chr02:7922309..7922333 (25 bp)
CTGACGACAAAAGGGCTTCCGGCGG
LOC_Os02g14420
OsAffx.12034.1.S1_at--57--8392Chr02:7922886..7922907 (22 bp)
GGCGAGTGTTACGTGGCGATCAACT
LOC_Os02g14420
OsAffx.12034.1.S1_at--978--4053Chr02:7922886..7922909 (24 bp)
CGAGTGTTACGTGGCGATCAACTTA
LOC_Os02g14420
OsAffx.12034.1.S1_at--309--7436Chr11:4305103..4305129 (25 bp)
GTGTTACGTGGCGATCAACTTAGAA
NONE
OsAffx.12034.1.S1_at--1044--6776Chr11:4305105..4305131 (25 bp)
GTTACGTGGCGATCAACTTAGAAGT
NONE
OsAffx.12034.1.S1_at--390--1916Chr11:4305108..4305134 (25 bp)
ACGTGGCGATCAACTTAGAAGTGTT
NONE
Target Sequence 
GAAGGCATCGGCAGCGACCTGACGACAAAAGGGCTTCCGGCGGGGGGATCGGTGGAGGGCGAGCCTTCAGCGGGGATCGG
TGGCGAGTGTTACGTGGCGATCAACTTAGAAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis