Browse Element(s) Details


OsAffx.12102.1.S1_at

Description tigr:9630.m01752
TID=OsAffx.12102.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1853010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18510OsAffx.2667.1.S1_at11/112+10776282..10780756NB-ARC domain containing protein
LOC_Os02g18520Os.46715.1.S1_at3/112+10792693..10797079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18520Os.46715.1.S1_x_at2/112+10792693..10797079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18530OsAffx.12102.1.S1_at10/112+10800142..10802475hypothetical protein
LOC_Os02g18540OsAffx.24308.1.S1_s_at11/112+10803654..10812274Protein of unknown function, DUF614 containing protein, expressed
LOC_Os02g18550Os.2249.1.S1_at11/112+10822641..1082567040S ribosomal protein S3a, putative, expressed
LOC_Os02g18560NANA2+10827394..10831164retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12102.1.S1_at--477--4551Chr02:10801499..10801523 (25 bp)
GCCCATGAGCACGAGATGTTCTTAA
LOC_Os02g18530
OsAffx.12102.1.S1_at--346--311Chr02:10801619..10801643 (25 bp)
ATAGCCACGCTTTTCCAGATCAAGG
LOC_Os02g18530
OsAffx.12102.1.S1_at--118--6971Chr02:10801679..10801703 (25 bp)
GTAGCGAGTTTGTCTGTCACTGGCA
LOC_Os02g18530
OsAffx.12102.1.S1_at--981--8872Chr02:10801795..10801819 (25 bp)
TGATGGATCCTTTGATGCTGCCCTA
LOC_Os02g18530
OsAffx.12102.1.S1_at--693--5231Chr02:10801861..10801885 (25 bp)
GAATACAATCTTCGCGTCCTGTAAA
LOC_Os02g18530
OsAffx.12102.1.S1_at--1046--7771Chr02:10801904..10801928 (25 bp)
GGTGCTCTCGAATCAGAACTGCGTG
LOC_Os02g18530
OsAffx.12102.1.S1_at--657--7811Chr02:10801940..10801964 (25 bp)
GGTCTGAATCTAGTTCTCCATTGGA
LOC_Os02g18530
OsAffx.12102.1.S1_at--671--1811Chr02:10801964..10801988 (25 bp)
ACCCTGCTCCCAATTCTAGTTGAAA
LOC_Os02g18530
OsAffx.12102.1.S1_at--241--7971Chr02:10802032..10802056 (25 bp)
GGATCGGTCGGAATTGGCTAACATT
LOC_Os02g18530
OsAffx.12102.1.S1_at--386--9831Chr02:10802068..10802092 (25 bp)
TAAACGCTTGCTAGCCGGGACTAGG
LOC_Os02g18530
OsAffx.12102.1.S1_at--800--3131NONE
AATTCTAGTCACAAGGCCAACCGAT
NONE
Target Sequence 
GCCCATGAGCACGAGATGTTCTTAATGACGCTATGGCGGAATTGGCATGTTCGCAATGAAATCACCCATGATAAAGCAGC
CCCTCCGCTGGAAGTTTCGAAAAGATTTGTTGAAAGTTACATAGCCACGCTTTTCCAGATCAAGGAATCACCGCTGAAAG
ATGTGGAAAAAGGGAAGTCTGTAGCGAGTTTGTCTGTCACTGGCAGGGTGAAACCTCAGGTTGGTTGGATGAAACTCAAT
GTTGATGGATCCTTTGATGCTGCCCTATGTAAGGGAGGAATTGGTATGGTTTTACGGGATAGCAGTGGGAATACAATCTT
CGCGTCCTGTAAACCGCTGAACAGATGCACAGGTGCTCTCGAATCAGAACTGCGTGCCTGTGTAGAAGGTCTGAATCTAG
TTCTCCATTGGACCCTGCTCCCAATTCTAGTTGAAACAGATTGCATGTCTGTAGTGCAACTGTTAAATGATGGGGAAAGG
GATCGGTCGGAATTGGCTAACATTGTTCATGAGGCTAAACGCTTGCTAGCCGGGACTAGGAGAATTCTAGTCACAAGGCC
AACCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis