Browse Element(s) Details


OsAffx.12216.1.S1_at

Description tigr:9630.m02549
TID=OsAffx.12216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2696011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26920NANA2+15805055..15811017retrotransposon protein, putative, unclassified
LOC_Os02g26930NANA2+15811640..15814771retrotransposon protein, putative, unclassified
LOC_Os02g26940Os.52372.1.S1_at11/112+15815665..15820107vegetative storage protein, putative, expressed
LOC_Os02g26950OsAffx.12215.1.S1_at11/112+15822186..15822868hypothetical protein
LOC_Os02g26960OsAffx.12216.1.S1_at11/112+15823380..15827304expressed protein
LOC_Os02g26970OsAffx.2766.1.S1_at11/112+15828555..15829232hypothetical protein
LOC_Os02g26984Os.14896.1.S1_at11/112+15837028..15850339expressed protein
LOC_Os02g26984OsAffx.19099.1.S1_at1/112+15837028..15850339expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12216.1.S1_at--755--3772Chr02:15826726..15826750 (25 bp)
CTCTCCCTGCTGAAATTGTTTCTCA
LOC_Os02g26960
OsAffx.12216.1.S1_at--108--3331Chr02:15826796..15826820 (25 bp)
CACTGGTACTACTGAAGCTTCGGAA
LOC_Os02g26960
OsAffx.12216.1.S1_at--141--8011Chr02:15826865..15826889 (25 bp)
GGATGGATACACAGCCAGACCTGAA
LOC_Os02g26960
OsAffx.12216.1.S1_at--975--8471Chr02:15826892..15826916 (25 bp)
TGGCGATGAGTTGTCTTCGTCTGAA
LOC_Os02g26960
OsAffx.12216.1.S1_at--891--9451Chr02:15826964..15826988 (25 bp)
TCTGGACGTTCCGTTTTCTGATGAG
LOC_Os02g26960
OsAffx.12216.1.S1_at--891--51Chr02:15827081..15827105 (25 bp)
ATTGAGCCAGATAGCCGTCGATGAT
LOC_Os02g26960
OsAffx.12216.1.S1_at--320--451Chr02:15827104..15827128 (25 bp)
ATCTAGTGGCAGACTTGAGCGACTT
LOC_Os02g26960
OsAffx.12216.1.S1_at--116--5891Chr02:15827120..15827144 (25 bp)
GAGCGACTTGTCATTGCAGCAAACA
LOC_Os02g26960
OsAffx.12216.1.S1_at--1057--10451Chr02:15827190..15827214 (25 bp)
TTACCATCCCCGATGAACTATTCTT
LOC_Os02g26960
OsAffx.12216.1.S1_at--184--2531Chr02:15827205..15827229 (25 bp)
AACTATTCTTCGTTCTCTAGCTAAC
LOC_Os02g26960
OsAffx.12216.1.S1_at--872--9531Chr02:15827220..15827244 (25 bp)
TCTAGCTAACAGTGCAGATGGCTTA
LOC_Os02g26960
Target Sequence 
CTCTCCCTGCTGAAATTGTTTCTCAGCATGATGACATGCAAATGGAGCAAAAAGAAAATAATGATTATGACACTGGTACT
ACTGAAGCTTCGGAAGTTGCTAATGTAATTAGGGGCACAAATGAACATGGTAAGCAAATGGATGGATACACAGCCAGACC
TGAAGATGGCGATGAGTTGTCTTCGTCTGAAGTTCTTGAGCAGACAGAGTCAAGAGAGACTATCTTTAAGGTGTGGGATC
TGGACGTTCCGTTTTCTGATGAGGATGAGCTTGAACTCATCAAGGATCTGAAGAAACTCCTCAAGGACAATCCTCAGGAG
TCTGAATTTCGACCTCCCAGTGGAACAGCCAAGACATTGAGCCAGATAGCCGTCGATGATCTAGTGGCAGACTTGAGCGA
CTTGTCATTGCAGCAAACAGACGAGTAGCAACATTCCCCCAAGATATTTCTGTGGCAAAATTTTTTACCATCCCCGATGA
ACTATTCTTCGTTCTCTAGCTAACAGTGCAGATGGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis