Browse Element(s) Details


OsAffx.12289.1.S1_at

Description tigr:9630.m02914
TID=OsAffx.12289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3045011/11Harpin-induced protein 1 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30410Os.49228.1.S1_at11/112+18104577..18108083expressed protein
LOC_Os02g30410Os.56237.1.S1_at11/112+18104577..18108083expressed protein
LOC_Os02g30410OsAffx.2808.1.S1_s_at10/112+18104577..18108083expressed protein
LOC_Os02g30420OsAffx.19073.1.S1_x_at1/112+18114347..18115253expressed protein
LOC_Os02g30430NANA2+18122624..18123385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30440OsAffx.24511.1.S1_at11/112+18124910..18125295hypothetical protein
LOC_Os02g30450OsAffx.12289.1.S1_at11/112+18131447..18132199Harpin-induced protein 1 containing protein
LOC_Os02g30460NANA2+18133196..18136793expressed protein
LOC_Os02g30470NANA2+18139886..18140095expressed protein
LOC_Os02g30480NANA2+18141334..18144991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30490NANA2+18145836..18146654hypothetical protein
LOC_Os02g30500NANA2+18147890..18149103hypothetical protein
LOC_Os02g30510OsAffx.8166.1.S1_at1/112+18149989..18152922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30510OsAffx.20387.1.S1_x_at1/112+18149989..18152922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30520NANA2+18153175..18156347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30530Os.51332.1.S1_at10/112+18157101..18160997transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0009863biological_processsalicylic acid mediated signaling pathway
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12289.1.S1_at--935--6971Chr02:18131957..18131981 (25 bp)
GTACCTGGCGCTGGACCCGAGGCTG
LOC_Os02g30450
OsAffx.12289.1.S1_at--808--911Chr02:18131938..18131962 (25 bp)
AGGCTGCCCCGGTACGCGATCGAGT
LOC_Os02g30450
OsAffx.12289.1.S1_at--375--1151Chr02:18131916..18131940 (25 bp)
AGTCGCTCACGGTGCAGGCCTTCGA
LOC_Os02g30450
OsAffx.12289.1.S1_at--946--4611Chr02:18131868..18131892 (25 bp)
GCGAGTATGGCTACGGCGACCCGCA
LOC_Os02g30450
OsAffx.12289.1.S1_at--876--10091Chr02:18131863..18131887 (25 bp)
TATGGCTACGGCGACCCGCAGCTGA
LOC_Os02g30450
OsAffx.12289.1.S1_at--491--3551Chr02:18131780..18131804 (25 bp)
CATCTCGTACGAGGAAGGGTCCAGC
LOC_Os02g30450
OsAffx.12289.1.S1_at--164--951Chr02:18131769..18131793 (25 bp)
AGGAAGGGTCCAGCCTCGCCGTGTT
LOC_Os02g30450
OsAffx.12289.1.S1_at--1010--7711Chr02:18131679..18131703 (25 bp)
GGGTGGTGCACGTCGCGATGGGCGA
LOC_Os02g30450
OsAffx.12289.1.S1_at--94--8891Chr02:18131624..18131648 (25 bp)
TGAGGCCATGCAGCAGGTTGTCGGC
LOC_Os02g30450
OsAffx.12289.1.S1_at--810--551Chr02:18131509..18131533 (25 bp)
ATCCGGTGCGACCTGGTGCTCGACA
LOC_Os02g30450
OsAffx.12289.1.S1_at--95--9111Chr02:18131493..18131517 (25 bp)
TGCTCGACAGGCTCAGCACCGAGGG
LOC_Os02g30450
Target Sequence 
GTACCTGGCGCTGGACCCGAGGCTGCCCCGGTACGCGATCGAGTCGCTCACGGTGCAGGCCTTCGACATGGACTACGACG
GCCACGGCGGCGAGTATGGCTACGGCGACCCGCAGCTGACGGCGCGGGCCAGCTTCGACGCCGCGGTGCGGTTCGAGAAC
CCCAACCGCGCCATCGACATCTCGTACGAGGAAGGGTCCAGCCTCGCCGTGTTCTACGGCGGCCACCGGCTGTCGGAGGG
CGCGCTGCCGGCGTTCTACCAGGGCCACGGCGACGCCGGGGTGGTGCACGTCGCGATGGGCGACGCGACGCTGGAGGGCG
CGGGCGCCGTGGCTGAGGCCATGCAGCAGGTTGTCGGCGGCGGCGGCGAGCTGCCGCTCGTGTTCCGCGGCGAGGTGCCG
GTGCGGGTGAAGGTTGGGCCGATCACGACGGGGAAGCTGACGCCGACCATCCGGTGCGACCTGGTGCTCGACAGGCTCAG
CACCGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis