Browse Element(s) Details


OsAffx.24511.1.S1_at

Description tigr:9630.m02913
TID=OsAffx.24511.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3044011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30400Os.46314.3.S1_at3/112+18099911..18102676transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30400OsAffx.8264.1.S1_at1/112+18099911..18102676transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30410Os.49228.1.S1_at11/112+18104577..18108083expressed protein
LOC_Os02g30410Os.56237.1.S1_at11/112+18104577..18108083expressed protein
LOC_Os02g30410OsAffx.2808.1.S1_s_at10/112+18104577..18108083expressed protein
LOC_Os02g30420OsAffx.19073.1.S1_x_at1/112+18114347..18115253expressed protein
LOC_Os02g30430NANA2+18122624..18123385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30440OsAffx.24511.1.S1_at11/112+18124910..18125295hypothetical protein
LOC_Os02g30450OsAffx.12289.1.S1_at11/112+18131447..18132199Harpin-induced protein 1 containing protein
LOC_Os02g30460NANA2+18133196..18136793expressed protein
LOC_Os02g30470NANA2+18139886..18140095expressed protein
LOC_Os02g30480NANA2+18141334..18144991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30490NANA2+18145836..18146654hypothetical protein
LOC_Os02g30500NANA2+18147890..18149103hypothetical protein
LOC_Os02g30510OsAffx.8166.1.S1_at1/112+18149989..18152922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30510OsAffx.20387.1.S1_x_at1/112+18149989..18152922retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24511.1.S1_at--775--8011Chr02:18124965..18124989 (25 bp)
GGAGGAAGCCGTACGTCCAGATCCA
LOC_Os02g30440
OsAffx.24511.1.S1_at--640--1651Chr02:18124971..18124995 (25 bp)
AGCCGTACGTCCAGATCCAGTATGA
LOC_Os02g30440
OsAffx.24511.1.S1_at--458--3431Chr02:18124982..18125006 (25 bp)
CAGATCCAGTATGACGATGACGACT
LOC_Os02g30440
OsAffx.24511.1.S1_at--692--8011Chr02:18125009..18125033 (25 bp)
GGAGGGAGCTACTTCGATTCGTGCC
LOC_Os02g30440
OsAffx.24511.1.S1_at--627--1571Chr02:18125015..18125039 (25 bp)
AGCTACTTCGATTCGTGCCGACTGT
LOC_Os02g30440
OsAffx.24511.1.S1_at--350--3991Chr02:18125028..18125052 (25 bp)
CGTGCCGACTGTGCCAACTGAAGAA
LOC_Os02g30440
OsAffx.24511.1.S1_at--680--6191Chr02:18125074..18125098 (25 bp)
GAGGAAGTTGCCTCGATCCGCTGCC
LOC_Os02g30440
OsAffx.24511.1.S1_at--737--551Chr02:18125089..18125175 (25 bp)
ATCCGCTGCCTGGAATCCGGAAGAG
LOC_Os02g30440
OsAffx.24511.1.S1_at--52--4271Chr02:18125213..18125237 (25 bp)
CCGGCGCTGGCGTTGAAAGAGATTC
LOC_Os02g30440
OsAffx.24511.1.S1_at--33--6671Chr02:18125224..18125248 (25 bp)
GTTGAAAGAGATTCCGTCGCCGACG
LOC_Os02g30440
OsAffx.24511.1.S1_at--849--91Chr02:18125234..18125258 (25 bp)
ATTCCGTCGCCGACGGTGGTTCTTG
LOC_Os02g30440
Target Sequence 
GGAGGAAGCCGTACGTCCAGATCCAGTATGACGATGACGACTGGGGAGGGAGCTACTTCGATTCGTGCCGACTGTGCCAA
CTGAAGAAGGAGAGGAGGTGGAGGCCTGGGAGGAAGTTGCCTCGATCCGCTGCCTGGAATCCGGAAGAGAGAAGGGAGAG
GCGGCACAGCCGGGGAGGGGAGAGGACCGGCGCTGGCGTTGAAAGAGATTCCGTCGCCGACGGTGGTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis