Browse Element(s) Details


OsAffx.12327.1.S1_x_at

Description tigr:9630.m03142
TID=OsAffx.12327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3310011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33030Os.39131.1.A1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33030OsAffx.12324.1.S1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33040OsAffx.12325.1.S1_at11/112+19636332..19636992hypothetical protein
LOC_Os02g33050NANA2+19637781..19638326hypothetical protein
LOC_Os02g33060Os.9930.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33060OsAffx.12326.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33070Os.9283.1.S1_at2/112+19643061..19643496hypothetical protein
LOC_Os02g33080Os.4756.1.S1_at11/112+19644045..19647588hydrolase, carbon-nitrogen family protein, expressed
LOC_Os02g33090OsAffx.2837.1.S1_at11/112+19648050..19648574expressed protein
LOC_Os02g33090OsAffx.2837.1.S1_x_at11/112+19648050..19648574expressed protein
LOC_Os02g33100OsAffx.12327.1.S1_at11/112+19654414..19654755hypothetical protein
LOC_Os02g33100OsAffx.12327.1.S1_x_at11/112+19654414..19654755hypothetical protein
LOC_Os02g33110Os.9416.1.S1_at10/112+19676675..19681381Beta-fructofuranosidase, insoluble isoenzyme 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12327.1.S1_x_at--559--10572Chr05:7764408..7764721 (25 bp)
TTCTCTTCTTCAGTGAGGAAGCCGG
NONE
OsAffx.12327.1.S1_x_at--881--9513Chr11:11784980..11785007 (23 bp)
TCTCTTCTTCAGTGAGGAAGCCGGC
NONE
OsAffx.12327.1.S1_x_at--314--3753Chr06:13408917..13408945 (25 bp)
CTCTTCTTCAGTGAGGAAGCCGGCG
NONE
OsAffx.12327.1.S1_x_at--556--9991Chr02:19654570..19654594 (25 bp)
TAGCCTGGTGACCTCCGTCTATGAG
LOC_Os02g33100
OsAffx.12327.1.S1_x_at--859--8611Chr02:19654565..19654589 (25 bp)
TGGTGACCTCCGTCTATGAGACCCA
LOC_Os02g33100
OsAffx.12327.1.S1_x_at--342--7751Chr02:19654564..19654588 (25 bp)
GGTGACCTCCGTCTATGAGACCCAC
LOC_Os02g33100
OsAffx.12327.1.S1_x_at--790--7091Chr02:19654554..19654578 (25 bp)
GTCTATGAGACCCACCTCGACTTTG
LOC_Os02g33100
OsAffx.12327.1.S1_x_at--83--9531Chr02:19654553..19654577 (25 bp)
TCTATGAGACCCACCTCGACTTTGC
LOC_Os02g33100
OsAffx.12327.1.S1_x_at--8--10111Chr02:19654551..19654575 (25 bp)
TATGAGACCCACCTCGACTTTGCCG
LOC_Os02g33100
OsAffx.12327.1.S1_x_at--854--5691Chr02:19654536..19654560 (25 bp)
GACTTTGCCGCGCTGTCATGGACGC
LOC_Os02g33100
OsAffx.12327.1.S1_x_at--108--8511Chr02:19654454..19654478 (25 bp)
TGGCATCCTCCTTAGCGACGGGGTG
LOC_Os02g33100
Target Sequence 
TTCTCTTCTTCAGTGAGGAAGCCGGCGGTGGGTGGAGTGGCGATGGCGGCGTGCTTCCGCTGCGCGTCGTCCGCGGCACG
GGGCCGTCCGGCCCCGTGGGGCCTAGCCTGGTGACCTCCGTCTATGAGACCCACCTCGACTTTGCCGCGCTGTCATGGAC
GCGCACCTCCCTCGGCCTCTCACTCCGCGCCGTGCTCCGTCTCTCGTCCCTGGCCACCCTGGCATCCTCCTTAGCGACGG
GGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12327.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis