Browse Element(s) Details


OsAffx.12338.1.S1_at

Description tigr:9630.m03230
TID=OsAffx.12338.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3398011/11hypothetical protein
LOC_Os01g576701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33944OsAffx.2853.1.S1_at11/112+20221158..20229248transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g33944Os.54396.1.S1_at11/112+20221158..20229248transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g33960NANA2+20234187..20235137retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33970NANA2+20235705..20237471retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33980OsAffx.12338.1.S1_at11/112+20252258..20252653hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12338.1.S1_at--283--1353Chr02:20252441..20252465 (25 bp)
AGAGACGGCGGCGGGATCCTCCTTC
LOC_Os02g33980
OsAffx.12338.1.S1_at--967--3411Chr02:20252484..20252508 (25 bp)
CAGAGCTCGGGCACAGCGGAGTTGA
LOC_Os02g33980
OsAffx.12338.1.S1_at--602--9431Chr02:20252490..20252514 (25 bp)
TCGGGCACAGCGGAGTTGAAGAAAT
LOC_Os02g33980
OsAffx.12338.1.S1_at--154--3991Chr02:20252491..20252515 (25 bp)
CGGGCACAGCGGAGTTGAAGAAATT
LOC_Os02g33980
OsAffx.12338.1.S1_at--663--8991Chr02:20252506..20252530 (25 bp)
TGAAGAAATTGGACACGCTAGCGCT
LOC_Os02g33980
OsAffx.12338.1.S1_at--551--2751Chr02:20252508..20252532 (25 bp)
AAGAAATTGGACACGCTAGCGCTGC
LOC_Os02g33980
OsAffx.12338.1.S1_at--890--1411Chr02:20252509..20252533 (25 bp)
AGAAATTGGACACGCTAGCGCTGCT
LOC_Os02g33980
OsAffx.12338.1.S1_at--26--2251Chr02:20252511..20252535 (25 bp)
AAATTGGACACGCTAGCGCTGCTGC
LOC_Os02g33980
OsAffx.12338.1.S1_at--353--31Chr02:20252513..20252537 (25 bp)
ATTGGACACGCTAGCGCTGCTGCAG
LOC_Os02g33980
OsAffx.12338.1.S1_at--504--10871Chr02:20252514..20252538 (25 bp)
TTGGACACGCTAGCGCTGCTGCAGC
LOC_Os02g33980
OsAffx.12338.1.S1_at--90--10851Chr02:20252598..20252622 (25 bp)
TTGGCGTGTCCCACCGGCTGCTGCC
LOC_Os02g33980
Target Sequence 
AGAGACGGCGGCGGGATCCTCCTTCCCCACCATCGCAGCGGCGCAGAGCTCGGGCACAGCGGAGTTGAAGAAATTGGACA
CGCTAGCGCTGCTGCAGCCACCCCCTTCCCCTTCCCTTTCCTACGCCCTCCCCGCAACGCTGCCTCCATCATCCTCCTTG
GCGTGTCCCACCGGCTGCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis