Browse Element(s) Details


OsAffx.12450.1.S1_x_at

Description tigr:9629.m06700
TID=OsAffx.12450.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lipase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6743011/11lipase class 3 family protein, putative
LOC_Os11g193401/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67420Os.14775.1.S1_at11/111+39485002..39492578lipase class 3 family protein, putative, expressed
LOC_Os01g67430OsAffx.12450.1.S1_x_at11/111+39504018..39505325lipase class 3 family protein, putative
LOC_Os01g67440NANA1+39506618..39506914transposon protein, putative, unclassified
LOC_Os01g67450OsAffx.12450.2.S1_x_at11/111+39522538..39523821Lipase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12450.1.S1_x_at--1096--952Chr01:39504784..39504808 (25 bp)
AGGACGTCAGCGTCACGCTCGCCGG
LOC_Os01g67430
OsAffx.12450.1.S1_x_at--1068--791Chr01:39504816..39504840 (25 bp)
ATGGGCAGCGCGCTGGCGCTCCTCT
LOC_Os01g67430
OsAffx.12450.1.S1_x_at--636--4152Chr01:39504937..39504961 (25 bp)
CGCGCTGCGACGAGCTCGGCGTCAA
LOC_Os01g67430
OsAffx.12450.1.S1_x_at--1018--4631Chr01:39504970..39504994 (25 bp)
GCGTCACCAACGTACACGACCCGAT
LOC_Os01g67430
OsAffx.12450.1.S1_x_at--843--3211Chr01:39504977..39505001 (25 bp)
CAACGTACACGACCCGATCACCAAG
LOC_Os01g67430
OsAffx.12450.1.S1_x_at--388--4191Chr01:39505090..39505114 (25 bp)
CCCTCGACTTCTTCAAGGTCGGCGA
LOC_Os01g67430
OsAffx.12450.1.S1_x_at--768--7311Chr01:39505209..39505233 (25 bp)
GTGCTCGCCAAGGTGATGGACTTCG
LOC_Os01g67430
OsAffx.12450.1.S1_x_at--831--3791Chr01:39505212..39505236 (25 bp)
CTCGCCAAGGTGATGGACTTCGTGG
LOC_Os01g67430
OsAffx.12450.1.S1_x_at--317--8831Chr01:39505222..39505246 (25 bp)
TGATGGACTTCGTGGGTCGGCGGCG
LOC_Os01g67430
OsAffx.12450.1.S1_x_at--869--8371Chr01:39505254..39505278 (25 bp)
GGCGCATTGCCGTGGCACGACGCGG
LOC_Os01g67430
OsAffx.12450.1.S1_x_at--516--3351Chr01:39505269..39505293 (25 bp)
CACGACGCGGCGATGATACAGATGG
LOC_Os01g67430
Target Sequence 
AGGACGTCAGCGTCACGCTCGCCGGCCACAGCATGGGCAGCGCGCTGGCGCTCCTCTCCGCCTACGACCTCGCCGAGCTC
GGCCTCAACCGCGCCGCCCCGGTCACCGTCTTCTCCTTCGGCGGGCCGAGGGTGGGGAACGCGGCGTTCAAGGCGCGCTG
CGACGAGCTCGGCGTCAAGGCGCTCCGCGTCACCAACGTACACGACCCGATCACCAAGCTCCCCGGCGTCTTCCTCAACG
AGGCCACCGCCGGCGTGCTCCGCCCGTGGCGCCACTCCTGCTACACCCACGTCGGCGTCGAGCTCCCCCTCGACTTCTTC
AAGGTCGGCGACCTCGCCTCCGTCCACGACCTCGCCACCTACATCTCCCTCCTCCGTGGCGCCGACAAGAAGCAGCCCGC
CGCCGCCGCCGCCGACGCCGGCGGCGTGCTCGCCAAGGTGATGGACTTCGTGGGTCGGCGGCGCGGCGGCGGCGCATTGC
CGTGGCACGACGCGGCGATGATACAGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12450.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis