Browse Element(s) Details


OsAffx.12711.4.S1_at

Description tigr:9630.m03818
TID=OsAffx.12711.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3965011/11expressed protein
LOC_Os02g121002/11hypothetical protein
LOC_Os02g122002/11Kinesin heavy chain, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39650OsAffx.12711.4.S1_at11/112+23937826..23940643expressed protein
LOC_Os02g39650OsAffx.12711.2.S1_x_at4/112+23937826..23940643expressed protein
LOC_Os02g39650OsAffx.12711.2.S1_at2/112+23937826..23940643expressed protein
LOC_Os02g39660OsAffx.2919.1.S1_at11/112+23947057..23948732Leucine Rich Repeat family protein, expressed
LOC_Os02g39670NANA2+23960206..23962653retrotransposon, putative, centromere-specific, expressed
LOC_Os02g39680NANA2+23964108..23966213retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12711.4.S1_at--402--371Chr02:23938863..23938884 (22 bp)
ATCAAGCAAGATGGCCATGCAAACG
LOC_Os02g39650
OsAffx.12711.4.S1_at--479--3871Chr02:23938808..23938832 (25 bp)
CTGTTCAAGCATTAGGTTATATCCA
LOC_Os02g39650
OsAffx.12711.4.S1_at--249--10451Chr02:23938797..23938821 (25 bp)
TTAGGTTATATCCATCAGTTGCATT
LOC_Os02g39650
OsAffx.12711.4.S1_at--1047--7871Chr02:23938794..23938818 (25 bp)
GGTTATATCCATCAGTTGCATTATT
LOC_Os02g39650
OsAffx.12711.4.S1_at--825--253Chr02:6344211..6344235 (25 bp)
ATATCCATCAGTTGCATTATTGTAA
LOC_Os02g12200
OsAffx.12711.4.S1_at--708--3553Chr02:6344216..6344240 (25 bp)
CATCAGTTGCATTATTGTAAAGGTT
LOC_Os02g12200
OsAffx.12711.4.S1_at--537--1611Chr02:23938210..23938234 (25 bp)
AGCTGTTGTACCGTCCAACTCCACA
LOC_Os02g39650
OsAffx.12711.4.S1_at--915--2531Chr02:23938194..23938218 (25 bp)
AACTCCACAAATATGGGCTGCTTGC
LOC_Os02g39650
OsAffx.12711.4.S1_at--704--3811Chr02:23938192..23938216 (25 bp)
CTCCACAAATATGGGCTGCTTGCAT
LOC_Os02g39650
OsAffx.12711.4.S1_at--1155--7931Chr02:23937862..23937886 (25 bp)
GGATATAATATTTTCAGCAATTGTT
LOC_Os02g39650
OsAffx.12711.4.S1_at--863--3111Chr02:23937856..23937880 (25 bp)
AATATTTTCAGCAATTGTTGCTAAG
LOC_Os02g39650
Target Sequence 
ATCAAGCAAGATGGCCATGCAAACGCTGTTCCTGAACCGAGTAAGATGGTAGGAGCTGTTCAAGCATTAGGTTATATCCA
TCAGTTGCATTATTGTAAAGGTTTTAGAGTATTTGATGAAAAAGTTTGTGCAGGACTGCAGGGAGCTGTTGTACCGTCCA
ACTCCACAAATATGGGCTGCTTGCATGGTCCTCCTGTGCTGGCAAGGGCATCGGCTGGTACTGCAGGCTTGGCCGCTGCA
AGGGGTGCTGGCGCCGTCGGCAGGGCCCAGCTGTTCCTGCTCCCAAGGGACGACCATGACTGTTGCAGCCATAGTGGTGG
CCACGCTTTGCAAGGCAGTGAATGTGAATTAACGACATGGTCAGCCACAAAGCAGCAAAAATCAGGAAAAATCTGGTTGA
AGGATATAATATTTTCAGCAATTGTTGCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12711.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis