Browse Element(s) Details


OsAffx.2919.1.S1_at

Description tigr:9630.m03819
TID=OsAffx.2919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3966011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39650OsAffx.12711.4.S1_at11/112+23937826..23940643expressed protein
LOC_Os02g39650OsAffx.12711.2.S1_x_at4/112+23937826..23940643expressed protein
LOC_Os02g39650OsAffx.12711.2.S1_at2/112+23937826..23940643expressed protein
LOC_Os02g39660OsAffx.2919.1.S1_at11/112+23947057..23948732Leucine Rich Repeat family protein, expressed
LOC_Os02g39670NANA2+23960206..23962653retrotransposon, putative, centromere-specific, expressed
LOC_Os02g39680NANA2+23964108..23966213retrotransposon, putative, centromere-specific
LOC_Os02g39689NANA2+23967783..23968090NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2919.1.S1_at--95--3611Chr02:23947837..23947861 (25 bp)
CTTGGCAACATTTCACAGCTACATT
LOC_Os02g39660
OsAffx.2919.1.S1_at--1122--7051Chr02:23947913..23947937 (25 bp)
GTAAGCTTTCGAACCTGTCTGTCAA
LOC_Os02g39660
OsAffx.2919.1.S1_at--735--9331Chr02:23947941..23947965 (25 bp)
TCAGTACCTGCTTTTGGACGGAAAC
LOC_Os02g39660
OsAffx.2919.1.S1_at--1005--3051Chr02:23947999..23948023 (25 bp)
AATCTTCAACAACTCACACAGCTGG
LOC_Os02g39660
OsAffx.2919.1.S1_at--1127--1571Chr02:23948153..23948177 (25 bp)
AGCTCGTATGGCTGAACCTCGGCAA
LOC_Os02g39660
OsAffx.2919.1.S1_at--794--8231Chr02:23948173..23948197 (25 bp)
GGCAACAACTACCTCCATGGTGAAG
LOC_Os02g39660
OsAffx.2919.1.S1_at--431--4671Chr02:23948207..23948231 (25 bp)
GCGTGGCAAATCTTCAACAGCTCGT
LOC_Os02g39660
OsAffx.2919.1.S1_at--1019--8091Chr02:23948238..23948262 (25 bp)
GGACCTCAGTCACAATAATCTCAGT
LOC_Os02g39660
OsAffx.2919.1.S1_at--750--8231Chr02:23948263..23948287 (25 bp)
GGCAAAGTACCTCGCAGCTTGGGAA
LOC_Os02g39660
OsAffx.2919.1.S1_at--742--7611Chr02:23948283..23948307 (25 bp)
GGGAAACCTTCCTAAGCTCAGGCAG
LOC_Os02g39660
OsAffx.2919.1.S1_at--692--931Chr02:23948302..23948326 (25 bp)
AGGCAGCTGGACCTTAGCCACAATA
LOC_Os02g39660
Target Sequence 
CTTGGCAACATTTCACAGCTACATTTGATATATCTGTCAGAGAACAATTTCTCTGGGCAAATTCCTAGCTCTCTCGGTAA
GCTTTCGAACCTGTCTGTCAACCTTCAGTACCTGCTTTTGGACGGAAACAATCTATCAGGACACATACCGTCCAACATGG
GAAATCTTCAACAACTCACACAGCTGGACCTTAGTTACAATAATCTAAAAGGCAAGATGCCACCCAGCTTGGGAAATCTT
CAGCGGCTAGTGAGCTTTAATCTCAGTAACAACAATCTTCAAGGTGATATACCATCCAAGTTTGGAGATCTTCAACAGCT
CGTATGGCTGAACCTCGGCAACAACTACCTCCATGGTGAAGTACCATCTAGCGTGGCAAATCTTCAACAGCTCGTCCTGT
TGGACCTCAGTCACAATAATCTCAGTGGCAAAGTACCTCGCAGCTTGGGAAACCTTCCTAAGCTCAGGCAGCTGGACCTT
AGCCACAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis