Browse Element(s) Details


OsAffx.12779.1.A1_x_at

Description gb:NM_186507.1
DB_XREF= gi:34900099
TID=OsAffx.12779.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1116_C08.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g433001/11expressed protein
LOC_Os06g296301/11AC transposase, putative, expressed
LOC_Os01g689001/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43280Os.10493.1.S1_at11/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.52279.1.S1_at10/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_s_at8/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_x_at5/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43290Os.18692.1.S1_at11/112+26084581..26086052Protein kinase domain containing protein, expressed
LOC_Os02g43300Os.13466.1.S1_at11/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.12779.1.A1_x_at1/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.2477.1.S1_x_at1/112+26093367..26096718expressed protein
LOC_Os02g43310OsAffx.29929.1.S1_at5/112+26106943..26107553hypothetical protein
LOC_Os02g43314Os.54896.1.S1_at11/112+26120238..26121290expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0005516molecular_functioncalmodulin binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12779.1.A1_x_at--1029--9133Chr07:6259584..6259608 (25 bp)
TGCGGCATCCAGATCGCGGCATCGC
NONE
OsAffx.12779.1.A1_x_at--422--1679Chr12:26749785..26749805 (21 bp)
ACCACACCGACGAGGCGACGACGAC
NONE
OsAffx.12779.1.A1_x_at--356--1635Chr08:27463485..27463509 (25 bp)
AGCGGCAGCATCTGAGCAACCAGCA
NONE
OsAffx.12779.1.A1_x_at--921--5055Chr08:27463489..27463513 (25 bp)
GCAGCATCTGAGCAACCAGCAGCAG
NONE
OsAffx.12779.1.A1_x_at--691--5055Chr08:27463507..27463531 (25 bp)
GCAGCAGCAGGTGTATATAGTGATT
NONE
OsAffx.12779.1.A1_x_at--378--3415Chr08:27463511..27463535 (25 bp)
CAGCAGGTGTATATAGTGATTGACT
NONE
OsAffx.12779.1.A1_x_at--703--7415Chr08:27463526..27463550 (25 bp)
GTGATTGACTTTGCACTTTTACTAA
NONE
OsAffx.12779.1.A1_x_at--544--6595Chr08:27463528..27463552 (25 bp)
GATTGACTTTGCACTTTTACTAATG
NONE
OsAffx.12779.1.A1_x_at--1041--5695Chr08:27463532..27463556 (25 bp)
GACTTTGCACTTTTACTAATGCTCT
NONE
OsAffx.12779.1.A1_x_at--603--5115Chr08:27463538..27463562 (25 bp)
GCACTTTTACTAATGCTCTATCATT
NONE
OsAffx.12779.1.A1_x_at--876--4816Chr08:27463552..27463576 (25 bp)
GCTCTATCATTTTTTTTGAAGGCTA
NONE
Target Sequence 
TGCGGCATCCAGATCGCGGCATCGCGGCGCCGGCGTGCCCTCACGCCCACCGCCCGTGGCGCCGGCGCCCCACCGCCCAC
TGCTGGTCGCCTGGCCGGCTGGCCCCCGCCGTCCTCGCTCCCACCATCTCGCGCCGCCCTTGCTCTTCGTCGTTTCGCCG
CCGGCCGCCGCCACCATCTCGCACCTCCGCCGGCCTGCTCGGTCCCCGCCATCTCAAGGCGCCGTCCCACCGCGTCTCGC
CGTTTCACCGTCGCCACCACCGCCGCCGNCGACGGAACAACCACCACACCGACGAGGCGACGACGACACCACCACTGCAG
TCTCTTCCTCACNGCCACCAACGCCGACGGCTCCTCGCCTCGCAGCAGCCAGCAGCCCAGCGGCAGCATCTGAGCAACCA
GCAGCAGCAGGTGTATATAGTGATTGACTTTGCACTTTTACTAATGCTCTATCATTTTTTTTGAAGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12779.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis