Browse Element(s) Details


OsAffx.12995.1.S1_at

Description tigr:9631.m02293
TID=OsAffx.12995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2294011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22890Os.26043.1.S1_at11/113+13206155..13210903Nucleolar GTP-binding protein 2, putative, expressed
LOC_Os03g22900Os.48420.1.A1_at11/113+13215516..13226730transcriptional activator, putative, expressed
LOC_Os03g22910OsAffx.25197.1.S1_at11/113+13228297..13228654hypothetical protein
LOC_Os03g22919NANA3+13229366..13229698NA
LOC_Os03g22930OsAffx.25198.1.S1_at11/113+13232701..13233234hypothetical protein
LOC_Os03g22940OsAffx.12995.1.S1_at11/113+13235722..13236573expressed protein
LOC_Os03g22950Os.47768.1.S1_at11/113+13237080..13239471Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g22960OsAffx.25199.1.S1_at11/113+13242011..13243186expressed protein
LOC_Os03g22970Os.2987.3.S1_x_at3/113+13244334..13248447transposon protein, putative, unclassified
LOC_Os03g22980NANA3+13249024..13250446retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g22990Os.57404.1.S1_at11/113+13251612..13254083F-box domain containing protein, expressed
LOC_Os03g23000Os.56029.1.S1_at1/113+13255009..13255245hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12995.1.S1_at--1071--4751Chr03:13235988..13236012 (25 bp)
GCTGCAACTGCGACTTGTTGGGAAT
LOC_Os03g22940
OsAffx.12995.1.S1_at--153--8191Chr03:13236008..13236032 (25 bp)
GGAATAGTCGACTGCCATTGCCAGC
LOC_Os03g22940
OsAffx.12995.1.S1_at--987--8491Chr03:13236046..13236070 (25 bp)
TGGCATGTCATGACGGGTGGCCCAA
LOC_Os03g22940
OsAffx.12995.1.S1_at--598--7531Chr03:13236062..13236086 (25 bp)
GTGGCCCAAGGAACACCATGGTTCT
LOC_Os03g22940
OsAffx.12995.1.S1_at--924--9891Chr03:13236274..13236298 (25 bp)
TACTACCAATGTTCCACCGAGGCAG
LOC_Os03g22940
OsAffx.12995.1.S1_at--1147--6191Chr03:13236361..13236385 (25 bp)
GAGGCAGCAAGAGCTCACGCGAGCA
LOC_Os03g22940
OsAffx.12995.1.S1_at--371--872Chr03:13236386..13236410 (25 bp)
ATGGCGGCAAACATGCAGCAGCTCG
LOC_Os03g22940
OsAffx.12995.1.S1_at--528--1371Chr03:13236445..13236469 (25 bp)
AGAGCTCGCTCTACCACAGGAATGG
LOC_Os03g22940
OsAffx.12995.1.S1_at--549--5291Chr03:13236464..13236488 (25 bp)
GAATGGACTCATTAGGGCATGGACA
LOC_Os03g22940
OsAffx.12995.1.S1_at--714--9031Chr03:13236500..13236524 (25 bp)
TGCACCAGCCTGCAGTGATCACACA
LOC_Os03g22940
OsAffx.12995.1.S1_at--664--6451Chr03:13236516..13236540 (25 bp)
GATCACACACTACAACTACATGCAC
LOC_Os03g22940
Target Sequence 
GCTGCAACTGCGACTTGTTGGGAATAGTCGACTGCCATTGCCAGCGCCGGCCGCGCCGTGGCATGTCATGACGGGTGGCC
CAAGGAACACCATGGTTCTGCGCCCAGCGCCGCCACCGGCGATGAACCACCCACACCCGCTACTCCGTGGCGGCGCCGTC
ACCGGAGCAGCTCCGCCGGTGACGACGCGGCGCAGCAGCGGCACAGGCTTCTTCTTGCCGCGCACCACGGCCGCCGACCC
CCGCCACGCGAACCACCACATGACGGCGGCTGCGGCGAGGCCCCCCTACTACCAATGTTCCACCGAGGCAGTGTCGGGCA
CAAAGGCACCGGCGAGGCAACGAGGCAGCGGCTGCGGCGACGACCATGGCGAGGAGGCAGCAAGAGCTCACGCGAGCAAT
GGCGGCAAACATGCAGCAGCTCGCCGGTGCTCCAGCGGCAACCACCAGCCCGTGCCCAGAGCTCGCTCTACCACAGGAAT
GGACTCATTAGGGCATGGACATGACGCACTCATGCACCAGCCTGCAGTGATCACACACTACAACTACATGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis