Browse Element(s) Details


OsAffx.13026.1.S1_at

Description tigr:9631.m02502
TID=OsAffx.13026.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative Myb-like DNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2555011/11Myb-like DNA-binding domain containing protein
LOC_Os03g372501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25510NANA3+14553332..14553577hypothetical protein
LOC_Os03g25530NANA3+14557363..14557743expressed protein
LOC_Os03g25540NANA3+14561517..14561795hypothetical protein
LOC_Os03g25550OsAffx.13026.1.S1_at11/113+14576970..14578374Myb-like DNA-binding domain containing protein
LOC_Os03g25554NANA3+14580611..14581061hypothetical protein
LOC_Os03g25560OsAffx.24156.2.S1_at11/113+14587936..14589016hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13026.1.S1_at--1033--4791Chr03:14577516..14577540 (25 bp)
GCTCGTCGGCGCAATGCAGCTGGTC
LOC_Os03g25550
OsAffx.13026.1.S1_at--460--9411Chr03:14577514..14577538 (25 bp)
TCGTCGGCGCAATGCAGCTGGTCGA
LOC_Os03g25550
OsAffx.13026.1.S1_at--631--3371Chr03:14577401..14577425 (25 bp)
CACCACGCGCTGAGCATGCAGCAGC
LOC_Os03g25550
OsAffx.13026.1.S1_at--1092--3491Chr03:14577339..14577363 (25 bp)
CATGGACGCGCTGTCGCACTGCGGC
LOC_Os03g25550
OsAffx.13026.1.S1_at--776--4511Chr03:14577239..14577263 (25 bp)
GCCGCCGAGCAGAGCGCCAACGTCG
LOC_Os03g25550
OsAffx.13026.1.S1_at--468--5751Chr03:14577119..14577143 (25 bp)
GACGAGCTCCGGTGGTCCGACTACT
LOC_Os03g25550
OsAffx.13026.1.S1_at--210--1231Chr03:14577115..14577139 (25 bp)
AGCTCCGGTGGTCCGACTACTTCGA
LOC_Os03g25550
OsAffx.13026.1.S1_at--386--3971Chr03:14577110..14577134 (25 bp)
CGGTGGTCCGACTACTTCGACGGCG
LOC_Os03g25550
OsAffx.13026.1.S1_at--593--2052Chr03:14577097..14577121 (25 bp)
ACTTCGACGGCGCATACCAAGCAGC
LOC_Os03g25550
OsAffx.13026.1.S1_at--123--5751Chr03:14577092..14577116 (25 bp)
GACGGCGCATACCAAGCAGCGACGA
LOC_Os03g25550
OsAffx.13026.1.S1_at--880--10491Chr03:14577046..14577070 (25 bp)
TTCAAGGGCAGTGCCTCTACGACGG
LOC_Os03g25550
Target Sequence 
GCTCGTCGGCGCAATGCAGCTGGTCGACGGCATCAAGATGCCGCTCGACGACTACTGGCCTGCGGCGGCGGCGGCGGCGG
CGCCCTCGTCGTCGACGACGACGTTCTCGGCCTACCACCACGCGCTGAGCATGCAGCAGCAGGCCGCGGCCGGATGCGGC
GCCGCCGCCGCCTTCGACATGGACGCGCTGTCGCACTGCGGCGTCGTCGTCGCCCCCTCGGCGTCTAGCTCCAGCACGCT
CACCTCCATGGCCGGCCTCAGCCCCGCCGCGGCCGACGCCGCCGAGCAGAGCGCCAACGTCGCCGCCGCCGCCGCCGCCA
CCACCACCAACCTGCCGTGGCTGGACCTGGGGCACGCCAACCCCATCGCGACGATGGACCACTACGCCGGCGTGCTGGAC
GAGCTCCGGTGGTCCGACTACTTCGACGGCGCATACCAAGCAGCGACGACGGCCACCCAAGGCGGCGCCCTTCAAGGGCA
GTGCCTCTACGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis