Browse Element(s) Details


OsAffx.13401.1.S1_at

Description tigr:9631.m04686
TID=OsAffx.13401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to phosphomevalonate kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4816010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48140OsAffx.25619.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48140Os.10915.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48150Os.15951.1.S1_at2/113+27344213..27346915expressed protein
LOC_Os03g48150OsAffx.5018.1.S1_at1/113+27344213..27346915expressed protein
LOC_Os03g48160OsAffx.13401.1.S1_at10/113+27352532..27355617expressed protein
LOC_Os03g48170Os.20457.1.S1_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_x_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_at10/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48180Os.11525.1.S1_s_at11/113+27362672..27367943POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13401.1.S1_at--413--7991Chr03:27353370..27353394 (25 bp)
GGATGCACTGGACAAGCTTTGCTTT
LOC_Os03g48160
OsAffx.13401.1.S1_at--502--5851Chr03:27354436..27354460 (25 bp)
GACCAGAAGTATTGCTTTCGCTGCC
LOC_Os03g48160
OsAffx.13401.1.S1_at--844--10511Chr03:27354596..27354749 (25 bp)
TTCACTATCTTGGAGCTCTTGGAGC
LOC_Os03g48160
OsAffx.13401.1.S1_at--216--1271Chr03:27354782..27354806 (25 bp)
AGATCCCCGTGGTGACCCAGGAACA
LOC_Os03g48160
OsAffx.13401.1.S1_at--291--5511NONE
GAACAAGGGCCGCTGACATTCATTC
NONE
OsAffx.13401.1.S1_at--97--8891Chr03:27355349..27355373 (25 bp)
TGATGGCCAGAGACGATGTGCTCGC
LOC_Os03g48160
OsAffx.13401.1.S1_at--736--771Chr03:27355364..27355388 (25 bp)
ATGTGCTCGCGGAAGATGATGTTAA
LOC_Os03g48160
OsAffx.13401.1.S1_at--80--771Chr03:27355390..27355510 (25 bp)
ATGTCATCTAATGGTACGCCTTCAA
LOC_Os03g48160
OsAffx.13401.1.S1_at--1144--1811Chr03:27355501..27355525 (25 bp)
ACGCCTTCAAAATCTGTGTATCGAC
LOC_Os03g48160
OsAffx.13401.1.S1_at--750--10151Chr03:27355519..27355543 (25 bp)
TATCGACAATTTGGCACGGCGTACT
LOC_Os03g48160
OsAffx.13401.1.S1_at--223--4651Chr03:27355537..27355561 (25 bp)
GCGTACTCTCGCAGCATGAACTATA
LOC_Os03g48160
Target Sequence 
GGATGCACTGGACAAGCTTTGCTTTTGCAAGGTTGCAACGATTTTTTATTCCTATAGAGAACAGATTGAAGCACGTGGCC
TCCCTCTAACTCCAGACCAGAAGTATTGCTTTCGCTGCCTCCATTCTGTCCAATTACATTTAATTCAGAAGTTGCTAATG
GAATTATGGAACAATGACTGGAGCAAACCTGAAGTTGCCAAAACTGGACTTGGGTCATCAGCTGCCATGACGACATCAAT
AGTTGCAGCTCTTCTTCACTATCTTGGAGCTCTTGGAGCTCAGCTGGTGTCCTCCCTCTTCTCGTTCGAGAAGATCCCCG
TGGTGACCCAGGAACAAGGGCCGCTGACATTCATTCANCCAACAGCAGGAAATCATTTGGACATGATGGCCAGAGACGAT
GTGCTCGCGGAAGATGATGTTAACATGTCATCTAATGGTACGCCTTCAAAATCTGTGTATCGACAATTTGGCACGGCGTA
CTCTCGCAGCATGAACTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis