Browse Element(s) Details


Os.15951.1.S1_at

Description gb:AK099457.1
DB_XREF= gi:32984666
TID=Os.15951.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022N15, full insert sequence.
FL= gb:AK061871.1 gb:AK099457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g481502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48120OsAffx.29738.3.S1_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48120OsAffx.29738.3.S1_x_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48140OsAffx.25619.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48140Os.10915.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48150Os.15951.1.S1_at2/113+27344213..27346915expressed protein
LOC_Os03g48150OsAffx.5018.1.S1_at1/113+27344213..27346915expressed protein
LOC_Os03g48160OsAffx.13401.1.S1_at10/113+27352532..27355617expressed protein
LOC_Os03g48170Os.20457.1.S1_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_x_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_at10/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48180Os.11525.1.S1_s_at11/113+27362672..27367943POT family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15951.1.S1_at--732--4931Chr03:27344280..27344304 (25 bp)
GCATTGGCAAGTTCTCCATCGGCAA
LOC_Os03g48150
Os.15951.1.S1_at--934--3813Chr12:22544913..22545430 (25 bp)
CTCCATCGGCAAGCCATTAGGCAAT
NONE
Os.15951.1.S1_at--33--7531Chr03:27344153..27344177 (25 bp)
GTGGAGCTCCTTCCTTCGCATCGAG
NONE
Os.15951.1.S1_at--1058--5892Chr10:4089241..4089265 (25 bp)
GAGCTCGGAGCCTTGGGTTCAGCAA
NONE
Os.15951.1.S1_at--74--9131Chr03:27344089..27344113 (25 bp)
TGCTGTTCTTCTCGTGGTGAGGCAA
NONE
Os.15951.1.S1_at--1015--7392Chr10:4089184..4089208 (25 bp)
GTGATGCATGCTGGGATTGAAACAT
NONE
Os.15951.1.S1_at--727--10371Chr03:27344035..27344059 (25 bp)
TTTTTTGTTCCGCAGGATCGACAGC
NONE
Os.15951.1.S1_at--132--992Chr10:4089147..4089171 (25 bp)
AGGATCGACAGCATGGTTGGCAAAA
NONE
Os.15951.1.S1_at--272--3151Chr03:27343972..27343996 (25 bp)
AATTGCACTGTGAGGCCAACATATT
NONE
Os.15951.1.S1_at--405--6611Chr03:27343926..27343950 (25 bp)
GATTGTGGACTTGTATTTGTGATTT
NONE
Os.15951.1.S1_at--417--3172Chr10:4088997..4089021 (25 bp)
AATTGAGGGCATATCTGAATCGGTT
NONE
Target Sequence 
GCATTGGCAAGTTCTCCATCGGCAAGCCATTAGGCAATCCGGCAGCCCCAAGTCCTCGGATCGACGACGGCGTGGAGCTC
CTTCCTCCGTGACGAGCTGCCGCCGTGGAGCTCCGTCCTCCACCGCCGTGGAGCTCCTTCCTTCGCATCGAGCCGCTGCC
GGGAGCTCGGAGCCTTGGGTTCAGCAACCGCTGCTGTTCTTCTCGTGGTGAGGCAATGGGTGATGCATGCTGGGATTGAA
ACATTTTTTTTGTTCCGCAGGATCGACAGCATGGTTGGCAAAATTAATTTTGATTTTTGTGATGGTGAAATTGCACTGTG
AGGCCAACATATTTGAATCGATGCTTGAATTTGTGATTGTGGACTTGTATTTGTGATTTGGTGAGAAGAAGAGGATGCTT
GAATTTGTAATTGAGGGCATATCTGAATCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis