Browse Element(s) Details


OsAffx.29738.3.S1_at

Description tigr:9631.m04683
TID=OsAffx.29738.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4812011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48080Os.2854.1.S1_at10/113+27292460..27295884CHCH domain containing protein, expressed
LOC_Os03g48090Os.2852.1.S1_at10/113+27296422..27300389Vegetatible incompatibility protein HET-E-1, putative, expressed
LOC_Os03g48100Os.52277.1.S1_x_at11/113+27300802..27307338expressed protein
LOC_Os03g48100Os.52277.1.S1_at9/113+27300802..27307338expressed protein
LOC_Os03g48104Os.50749.1.A1_at10/113+27312221..27313439expressed protein
LOC_Os03g48110Os.9082.1.S1_at9/113+27314050..27318264expressed protein
LOC_Os03g48120OsAffx.29738.3.S1_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48120OsAffx.29738.3.S1_x_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48140OsAffx.25619.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48140Os.10915.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48150Os.15951.1.S1_at2/113+27344213..27346915expressed protein
LOC_Os03g48150OsAffx.5018.1.S1_at1/113+27344213..27346915expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29738.3.S1_at--830--10691Chr03:27319928..27319952 (25 bp)
TTGCGCACACTGTTTCCCCCTATTT
LOC_Os03g48120
OsAffx.29738.3.S1_at--146--3951Chr03:27319773..27319797 (25 bp)
CGGCAGCGAGACGTTTCATGCACAC
LOC_Os03g48120
OsAffx.29738.3.S1_at--621--5071Chr03:27319771..27319795 (25 bp)
GCAGCGAGACGTTTCATGCACACCG
LOC_Os03g48120
OsAffx.29738.3.S1_at--12--1651Chr03:27319769..27319793 (25 bp)
AGCGAGACGTTTCATGCACACCGCG
LOC_Os03g48120
OsAffx.29738.3.S1_at--1094--4611Chr03:27319768..27319792 (25 bp)
GCGAGACGTTTCATGCACACCGCGC
LOC_Os03g48120
OsAffx.29738.3.S1_at--187--5771Chr03:27319764..27319788 (25 bp)
GACGTTTCATGCACACCGCGCCGTG
LOC_Os03g48120
OsAffx.29738.3.S1_at--451--4091Chr03:27319533..27319618 (25 bp)
CGACCGAGGCGGTACGCATTGGAGA
LOC_Os03g48120
OsAffx.29738.3.S1_at--861--8471Chr03:27319454..27319478 (25 bp)
TGGCGATGACTCTAGGCTACGCGCC
LOC_Os03g48120
OsAffx.29738.3.S1_at--70--4631Chr03:27319452..27319476 (25 bp)
GCGATGACTCTAGGCTACGCGCCTA
LOC_Os03g48120
OsAffx.29738.3.S1_at--852--671Chr03:27319449..27319473 (25 bp)
ATGACTCTAGGCTACGCGCCTACGC
LOC_Os03g48120
OsAffx.29738.3.S1_at--1104--4551Chr03:27319434..27319458 (25 bp)
GCGCCTACGCCGAGAGGTACCATTG
LOC_Os03g48120
Target Sequence 
TTGCGCACACTGTTTCCCCCTATTTTTACTTTTCTTAAATATATATTATATGCCGGTGATGACGACGGCACTATACCCAT
CCCGCGGTCGAACCTCAACGGCCAGCTCGACGACATCGCGGACCGTGCCGACGGCTCGGACGTGTTGTTCTCCGTCGGCA
GCGAGACGTTTCATGCACACCGCGCCGTGCTCGCCGCGCGCTCGCCGGTGTTCAAGATGGAGCTCCTCGGGTCCATGGCG
GAGTCCACCATGCCGTGCGTCACCCTGCACAACATCGACCCGGCCACGTTCAAAGCTCTACTACACTTCGTGTACATGGA
CGCCTTGCCGTCGCCGACCGAGGCGGTACGCATTGGAGAGGTTGAAGCTGATGTGTGCACAGAAGCTGTGGGAGAGTGTG
TCGGTGGAGACGGTGGCGATGACTCTAGGCTACGCGCCTACGCCGAGAGGTACCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29738.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis